Analysis of interatomic Contacts of Structural Units in PDB entry:
5J69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J69 entry

There are 2 chains in PDB entry 5J69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 718SER 982
B
 ASN 719SER 982
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5J69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
769 773Right-handed 310
Helix 2
AA2
A
823 835Right-handed alpha
Helix 3
AA3
A
838 850Right-handed alpha
Helix 4
AA4
A
871 887Right-handed alpha
Helix 5
AA5
A
899 912Right-handed alpha
Helix 6
AA6
A
963 966Right-handed 310
Helix 7
AA7
A
968 979Right-handed alpha
Helix 8
AA8
B
723 728Right-handed 310
Helix 9
AA9
B
784 789Right-handed alpha
Helix 10
AB1
B
823 836Right-handed alpha
Helix 11
AB2
B
839 850Right-handed alpha
Helix 12
AB3
B
871 887Right-handed alpha
Helix 13
AB4
B
900 913Right-handed alpha
Helix 14
AB5
B
918 922Right-handed 310
Helix 15
AB6
B
936 940Right-handed 310
Helix 16
AB7
B
968 980Right-handed alpha
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There are 6 sheets in PDB entry 5J69. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 767first strand
Strand 2
A
813 816anti-parallel
Strand 3
A
857 860anti-parallel
Strand 4
A
952 956anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 778first strand
Strand 2
A
803 810anti-parallel
Strand 3
A
861 868anti-parallel
Strand 4
A
924 929anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
852 856first strand
Strand 2
A
958 961anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
763 767first strand
Strand 2
B
813 817anti-parallel
Strand 3
B
852 859anti-parallel
Strand 4
B
958 961anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
775 778first strand
Strand 2
B
802 810anti-parallel
Strand 3
B
861 869anti-parallel
Strand 4
B
923 929anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
858 860first strand
Strand 2
B
952 955anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il