Analysis of interatomic Contacts of Structural Units in PDB entry:
5J6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J6F entry

There are 2 chains in PDB entry 5J6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3GLN 354
B
 MET 1GLN 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5J6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 42Right-handed alpha
Helix 2
AA2
A
47 62Right-handed alpha
Helix 3
AA3
A
67 94Right-handed alpha
Helix 4
AA4
A
130 144Right-handed alpha
Helix 5
AA5
A
167 182Right-handed alpha
Helix 6
AA6
A
191 199Right-handed alpha
Helix 7
AA7
A
208 212Right-handed 310
Helix 8
AA8
A
214 223Right-handed alpha
Helix 9
AA9
A
237 251Right-handed alpha
Helix 10
AB1
A
277 286Right-handed alpha
Helix 11
AB2
A
294 299Right-handed alpha
Helix 12
AB3
A
300 302Right-handed 310
Helix 13
AB4
A
303 314Right-handed alpha
Helix 14
AB5
A
326 330Right-handed 310
Helix 15
AB6
A
339 352Right-handed alpha
Helix 16
AB7
B
3 42Right-handed alpha
Helix 17
AB8
B
47 60Right-handed alpha
Helix 18
AB9
B
67 86Right-handed alpha
Helix 19
AC1
B
130 144Right-handed alpha
Helix 20
AC2
B
167 182Right-handed alpha
Helix 21
AC3
B
191 199Right-handed alpha
Helix 22
AC4
B
208 212Right-handed 310
Helix 23
AC5
B
214 223Right-handed alpha
Helix 24
AC6
B
237 251Right-handed alpha
Helix 25
AC7
B
277 286Right-handed alpha
Helix 26
AC8
B
294 299Right-handed alpha
Helix 27
AC9
B
300 302Right-handed 310
Helix 28
AD1
B
303 315Right-handed alpha
Helix 29
AD2
B
326 330Right-handed 310
Helix 30
AD3
B
339 352Right-handed alpha
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There are 4 sheets in PDB entry 5J6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
112 114anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
148 150parallel
Strand 3
A
184 188parallel
Strand 4
A
204 207parallel
Strand 5
A
228 231parallel
Strand 6
A
256 260parallel
Strand 7
A
290 293parallel
Strand 8
A
318 322parallel
Strand 9
A
120 124parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
112 114anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
148 150parallel
Strand 3
B
184 188parallel
Strand 4
B
204 207parallel
Strand 5
B
228 231parallel
Strand 6
B
256 260parallel
Strand 7
B
290 293parallel
Strand 8
B
318 322parallel
Strand 9
B
120 124parallel
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