Analysis of interatomic Contacts of Structural Units in PDB entry:
5J6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J6O entry

There is 1 chain in PDB entry 5J6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1930GLU 2222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5J6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1971 1984Right-handed alpha
Helix 2
AA2
A
2062 2070Right-handed alpha
Helix 3
AA3
A
2076 2088Right-handed alpha
Helix 4
AA4
A
2093 2096Right-handed 310
Helix 5
AA5
A
2115 2119Right-handed 310
Helix 6
AA6
A
2128 2140Right-handed alpha
Helix 7
AA7
A
2141 2143Right-handed 310
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There are 3 sheets in PDB entry 5J6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1936 1937first strand
Strand 2
A
1944 1950anti-parallel
Strand 3
A
2013 2021anti-parallel
Strand 4
A
2027 2034anti-parallel
Strand 5
A
2042 2052anti-parallel
Strand 6
A
1995 2002anti-parallel
Strand 7
A
2161 2171anti-parallel
Strand 8
A
2209 2214anti-parallel
Strand 9
A
2196 2203anti-parallel
Strand 10
A
2180 2185anti-parallel
Strand 11
A
2107 2112anti-parallel
Strand 12
A
2098 2104anti-parallel
Strand 13
A
2073 2075anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1936 1937first strand
Strand 2
A
1944 1950anti-parallel
Strand 3
A
2013 2021anti-parallel
Strand 4
A
2027 2034anti-parallel
Strand 5
A
2042 2052anti-parallel
Strand 6
A
1995 2002anti-parallel
Strand 7
A
2161 2171anti-parallel
Strand 8
A
2216 2220anti-parallel
Strand 9
A
2196 2203anti-parallel
Strand 10
A
2180 2185anti-parallel
Strand 11
A
2107 2112anti-parallel
Strand 12
A
2098 2104anti-parallel
Strand 13
A
2073 2075anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1965 1966first strand
Strand 2
A
1960 1962anti-parallel
Strand 3
A
2089 2091anti-parallel
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