Analysis of interatomic Contacts of Structural Units in PDB entry:
5J6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J6Q entry

There is 1 chain in PDB entry 5J6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6THR 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5J6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
57 67Right-handed alpha
Helix 3
AA3
A
100 114Right-handed alpha
Helix 4
AA4
A
207 219Right-handed alpha
Helix 5
AA5
A
232 238Right-handed alpha
Helix 6
AA6
A
269 286Right-handed alpha
Helix 7
AA7
A
298 311Right-handed alpha
Helix 8
AA8
A
326 333Right-handed alpha
Helix 9
AA9
A
333 340Right-handed alpha
Helix 10
AB1
A
353 365Right-handed alpha
Helix 11
AB2
A
366 370Right-handed 310
Helix 12
AB3
A
383 392Right-handed alpha
Helix 13
AB4
A
405 416Right-handed alpha
Helix 14
AB5
A
431 436Right-handed alpha
Helix 15
AB6
A
438 444Right-handed alpha
Helix 16
AB7
A
457 465Right-handed alpha
Helix 17
AB8
A
479 490Right-handed alpha
Helix 18
AB9
A
502 515Right-handed alpha
Helix 19
AC1
A
531 534Right-handed 310
Helix 20
AC2
A
535 548Right-handed alpha
Helix 21
AC3
A
560 571Right-handed alpha
Helix 22
AC4
A
585 596Right-handed alpha
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There are 9 sheets in PDB entry 5J6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
183 188parallel
Strand 3
A
73 80anti-parallel
Strand 4
A
46 50anti-parallel
Strand 5
A
53 54anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
89 91anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
174 176anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
145 148anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
170 172anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
261 267parallel
Strand 3
A
247 254anti-parallel
Strand 4
A
222 229anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
577 580parallel
Strand 3
A
521 524parallel
Strand 4
A
552 554parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
318 323parallel
Strand 3
A
372 376parallel
Strand 4
A
397 401parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 452first strand
Strand 2
A
423 428parallel
Strand 3
A
468 472parallel
Strand 4
A
496 498parallel
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