Analysis of interatomic Contacts of Structural Units in PDB entry:
5J70


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J70 entry

There are 6 chains in PDB entry 5J70 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1007GLY 1266
B
 MET 1007GLY 1266
W
 G 1 G 17
X
 C 1 C 17
Y
 G 1 G 17
Z
 C 1 C 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5J70. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1012 1026Right-handed alpha
Helix 2
AA2
A
1028 1030Right-handed 310
Helix 3
AA3
A
1031 1037Right-handed alpha
Helix 4
AA4
A
1045 1092Right-handed alpha
Helix 5
AA5
A
1103 1114Right-handed alpha
Helix 6
AA6
A
1130 1149Right-handed alpha
Helix 7
AA7
A
1154 1158Right-handed 310
Helix 8
AA8
A
1176 1191Right-handed alpha
Helix 9
AA9
A
1194 1201Right-handed alpha
Helix 10
AB1
A
1206 1210Right-handed 310
Helix 11
AB2
A
1249 1266Right-handed alpha
Helix 12
AB3
B
1012 1026Right-handed alpha
Helix 13
AB4
B
1031 1037Right-handed alpha
Helix 14
AB5
B
1045 1092Right-handed alpha
Helix 15
AB6
B
1103 1113Right-handed alpha
Helix 16
AB7
B
1130 1148Right-handed alpha
Helix 17
AB8
B
1154 1158Right-handed 310
Helix 18
AB9
B
1176 1191Right-handed alpha
Helix 19
AC1
B
1194 1201Right-handed alpha
Helix 20
AC2
B
1206 1210Right-handed 310
Helix 21
AC3
B
1249 1265Right-handed alpha
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There are 2 sheets in PDB entry 5J70. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1119 1122first strand
Strand 2
A
1125 1129anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1119 1122first strand
Strand 2
B
1125 1129anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il