Analysis of interatomic Contacts of Structural Units in PDB entry:
5J72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J72 entry

There are 2 chains in PDB entry 5J72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 10	LYS 647
B	SER 10	LYS 647

There are 52 helices in PDB entry 5J72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	99	106	Right-handed alpha
Helix 2	AA2	A	109	114	Right-handed 310
Helix 3	AA3	A	148	161	Right-handed alpha
Helix 4	AA4	A	175	180	Right-handed 310
Helix 5	AA5	A	182	190	Right-handed alpha
Helix 6	AA6	A	202	213	Right-handed alpha
Helix 7	AA7	A	227	238	Right-handed alpha
Helix 8	AA8	A	249	263	Right-handed alpha
Helix 9	AA9	A	278	293	Right-handed alpha
Helix 10	AB1	A	305	315	Right-handed alpha
Helix 11	AB2	A	330	339	Right-handed alpha
Helix 12	AB3	A	345	347	Right-handed 310
Helix 13	AB4	A	354	367	Right-handed alpha
Helix 14	AB5	A	383	397	Right-handed alpha
Helix 15	AB6	A	409	411	Right-handed 310
Helix 16	AB7	A	412	419	Right-handed alpha
Helix 17	AB8	A	432	443	Right-handed alpha
Helix 18	AB9	A	451	456	Right-handed alpha
Helix 19	AC1	A	479	483	Right-handed 310
Helix 20	AC2	A	486	504	Right-handed alpha
Helix 21	AC3	A	519	531	Right-handed alpha
Helix 22	AC4	A	555	559	Right-handed 310
Helix 23	AC5	A	562	579	Right-handed alpha
Helix 24	AC6	A	598	603	Right-handed alpha
Helix 25	AC7	A	618	624	Right-handed alpha
Helix 26	AC8	A	627	647	Right-handed alpha
Helix 27	AC9	B	99	106	Right-handed alpha
Helix 28	AD1	B	109	114	Right-handed 310
Helix 29	AD2	B	124	126	Right-handed 310
Helix 30	AD3	B	148	161	Right-handed alpha
Helix 31	AD4	B	175	180	Right-handed 310
Helix 32	AD5	B	181	190	Right-handed alpha
Helix 33	AD6	B	202	213	Right-handed alpha
Helix 34	AD7	B	227	238	Right-handed alpha
Helix 35	AD8	B	249	265	Right-handed alpha
Helix 36	AD9	B	278	293	Right-handed alpha
Helix 37	AE1	B	305	314	Right-handed alpha
Helix 38	AE2	B	330	339	Right-handed alpha
Helix 39	AE3	B	345	347	Right-handed 310
Helix 40	AE4	B	354	367	Right-handed alpha
Helix 41	AE5	B	383	397	Right-handed alpha
Helix 42	AE6	B	409	411	Right-handed 310
Helix 43	AE7	B	412	419	Right-handed alpha
Helix 44	AE8	B	432	443	Right-handed alpha
Helix 45	AE9	B	451	455	Right-handed 310
Helix 46	AF1	B	486	504	Right-handed alpha
Helix 47	AF2	B	519	531	Right-handed alpha
Helix 48	AF3	B	555	559	Right-handed 310
Helix 49	AF4	B	562	579	Right-handed alpha
Helix 50	AF5	B	598	603	Right-handed alpha
Helix 51	AF6	B	618	624	Right-handed alpha
Helix 52	AF7	B	627	647	Right-handed alpha

There are 18 sheets in PDB entry 5J72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	25	33	anti-parallel
Strand 3	A	65	72	anti-parallel
Strand 4	A	51	60	anti-parallel
Strand 5	A	41	48	anti-parallel
Strand 6	A	81	90	anti-parallel
Strand 7	A	115	118	anti-parallel
Strand 8	A	20	22	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	25	33	anti-parallel
Strand 3	A	65	72	anti-parallel
Strand 4	A	51	60	anti-parallel
Strand 5	A	41	48	anti-parallel
Strand 6	A	81	90	anti-parallel
Strand 7	A	95	98	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	137	138	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	420	427	parallel
Strand 3	A	371	379	parallel
Strand 4	A	400	403	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	167	172	parallel
Strand 3	A	216	220	parallel
Strand 4	A	241	245	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	269	274	parallel
Strand 3	A	317	323	parallel
Strand 4	A	341	343	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	269	274	parallel
Strand 3	A	317	323	parallel
Strand 4	A	349	350	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	510	first strand
Strand 2	A	462	467	parallel
Strand 3	A	534	541	parallel
Strand 4	A	608	615	parallel
Strand 5	A	550	553	anti-parallel
Strand 6	A	583	587	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	A	484	485	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	26	33	anti-parallel
Strand 3	B	65	71	anti-parallel
Strand 4	B	51	60	anti-parallel
Strand 5	B	41	48	anti-parallel
Strand 6	B	81	90	anti-parallel
Strand 7	B	115	117	anti-parallel
Strand 8	B	20	21	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	26	33	anti-parallel
Strand 3	B	65	71	anti-parallel
Strand 4	B	51	60	anti-parallel
Strand 5	B	41	48	anti-parallel
Strand 6	B	81	90	anti-parallel
Strand 7	B	95	98	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	137	138	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	B	420	427	parallel
Strand 3	B	371	379	parallel
Strand 4	B	400	403	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	196	first strand
Strand 2	B	167	172	parallel
Strand 3	B	216	220	parallel
Strand 4	B	241	245	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	269	274	parallel
Strand 3	B	317	323	parallel
Strand 4	B	341	343	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	269	274	parallel
Strand 3	B	317	323	parallel
Strand 4	B	349	350	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	510	first strand
Strand 2	B	462	467	parallel
Strand 3	B	534	541	parallel
Strand 4	B	608	615	parallel
Strand 5	B	550	553	anti-parallel
Strand 6	B	583	587	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	478	first strand
Strand 2	B	484	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J72

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J72