Analysis of interatomic Contacts of Structural Units in PDB entry:
5J78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J78 entry

There are 8 chains in PDB entry 5J78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 25	ILE 272
A	ALA 274	VAL 477
B	LEU 25	ILE 272
B	ALA 274	VAL 477
C	LEU 25	ILE 272
C	ALA 274	VAL 477
D	LEU 25	ILE 272
D	ALA 274	LYS 476

There are 75 helices in PDB entry 5J78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	52	Right-handed alpha
Helix 2	AA2	A	54	85	Right-handed alpha
Helix 3	AA3	A	88	108	Right-handed alpha
Helix 4	AA4	A	142	157	Right-handed alpha
Helix 5	AA5	A	169	187	Right-handed alpha
Helix 6	AA6	A	201	211	Right-handed alpha
Helix 7	AA7	A	222	230	Right-handed alpha
Helix 8	AA8	A	253	266	Right-handed alpha
Helix 9	AA9	A	267	271	Right-handed 310
Helix 10	AB1	A	285	296	Right-handed alpha
Helix 11	AB2	A	302	313	Right-handed alpha
Helix 12	AB3	A	321	324	Right-handed 310
Helix 13	AB4	A	327	336	Right-handed alpha
Helix 14	AB5	A	375	389	Right-handed alpha
Helix 15	AB6	A	402	411	Right-handed alpha
Helix 16	AB7	A	423	429	Right-handed alpha
Helix 17	AB8	A	444	448	Right-handed 310
Helix 18	AB9	A	456	459	Right-handed 310
Helix 19	AC1	B	27	52	Right-handed alpha
Helix 20	AC2	B	54	85	Right-handed alpha
Helix 21	AC3	B	88	108	Right-handed alpha
Helix 22	AC4	B	142	157	Right-handed alpha
Helix 23	AC5	B	166	168	Right-handed 310
Helix 24	AC6	B	169	187	Right-handed alpha
Helix 25	AC7	B	201	211	Right-handed alpha
Helix 26	AC8	B	222	230	Right-handed alpha
Helix 27	AC9	B	253	266	Right-handed alpha
Helix 28	AD1	B	267	270	Right-handed 310
Helix 29	AD2	B	285	296	Right-handed alpha
Helix 30	AD3	B	302	313	Right-handed alpha
Helix 31	AD4	B	327	336	Right-handed alpha
Helix 32	AD5	B	357	361	Right-handed 310
Helix 33	AD6	B	375	389	Right-handed alpha
Helix 34	AD7	B	402	411	Right-handed alpha
Helix 35	AD8	B	423	429	Right-handed alpha
Helix 36	AD9	B	444	448	Right-handed 310
Helix 37	AE1	B	456	459	Right-handed 310
Helix 38	AE2	C	27	52	Right-handed alpha
Helix 39	AE3	C	54	85	Right-handed alpha
Helix 40	AE4	C	88	108	Right-handed alpha
Helix 41	AE5	C	142	157	Right-handed alpha
Helix 42	AE6	C	169	187	Right-handed alpha
Helix 43	AE7	C	201	211	Right-handed alpha
Helix 44	AE8	C	222	230	Right-handed alpha
Helix 45	AE9	C	253	267	Right-handed alpha
Helix 46	AF1	C	268	270	Right-handed 310
Helix 47	AF2	C	285	296	Right-handed alpha
Helix 48	AF3	C	302	313	Right-handed alpha
Helix 49	AF4	C	321	324	Right-handed 310
Helix 50	AF5	C	327	336	Right-handed alpha
Helix 51	AF6	C	357	361	Right-handed 310
Helix 52	AF7	C	375	389	Right-handed alpha
Helix 53	AF8	C	402	411	Right-handed alpha
Helix 54	AF9	C	423	429	Right-handed alpha
Helix 55	AG1	C	444	448	Right-handed 310
Helix 56	AG2	C	456	459	Right-handed 310
Helix 57	AG3	D	27	52	Right-handed alpha
Helix 58	AG4	D	54	85	Right-handed alpha
Helix 59	AG5	D	88	108	Right-handed alpha
Helix 60	AG6	D	142	157	Right-handed alpha
Helix 61	AG7	D	169	187	Right-handed alpha
Helix 62	AG8	D	201	211	Right-handed alpha
Helix 63	AG9	D	222	230	Right-handed alpha
Helix 64	AH1	D	253	266	Right-handed alpha
Helix 65	AH2	D	267	270	Right-handed 310
Helix 66	AH3	D	285	296	Right-handed alpha
Helix 67	AH4	D	302	314	Right-handed alpha
Helix 68	AH5	D	320	324	Right-handed 310
Helix 69	AH6	D	327	336	Right-handed alpha
Helix 70	AH7	D	357	361	Right-handed 310
Helix 71	AH8	D	375	389	Right-handed alpha
Helix 72	AH9	D	402	411	Right-handed alpha
Helix 73	AI1	D	423	429	Right-handed alpha
Helix 74	AI2	D	444	448	Right-handed 310
Helix 75	AI3	D	456	459	Right-handed 310

There are 11 sheets in PDB entry 5J78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	124	130	anti-parallel
Strand 3	A	461	468	anti-parallel
Strand 4	B	415	420	parallel
Strand 5	B	393	399	parallel
Strand 6	B	244	248	parallel
Strand 7	B	276	282	parallel
Strand 8	B	367	373	parallel
Strand 9	B	345	349	parallel
Strand 10	B	298	300	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	160	165	parallel
Strand 3	A	133	138	parallel
Strand 4	A	216	219	parallel
Strand 5	A	236	238	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	345	349	parallel
Strand 3	A	367	373	parallel
Strand 4	A	276	282	parallel
Strand 5	A	244	248	parallel
Strand 6	A	393	399	parallel
Strand 7	A	415	420	parallel
Strand 8	B	461	468	parallel
Strand 9	B	124	130	anti-parallel
Strand 10	B	115	119	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	160	164	parallel
Strand 3	B	133	137	parallel
Strand 4	B	216	219	parallel
Strand 5	B	236	238	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	124	130	anti-parallel
Strand 3	C	461	468	anti-parallel
Strand 4	D	415	420	parallel
Strand 5	D	393	399	parallel
Strand 6	D	244	248	parallel
Strand 7	D	276	282	parallel
Strand 8	D	367	373	parallel
Strand 9	D	345	349	parallel
Strand 10	D	298	300	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	160	165	parallel
Strand 3	C	133	138	parallel
Strand 4	C	216	219	parallel
Strand 5	C	236	238	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	345	349	parallel
Strand 3	C	367	373	parallel
Strand 4	C	276	282	parallel
Strand 5	C	244	248	parallel
Strand 6	C	393	399	parallel
Strand 7	C	415	420	parallel
Strand 8	D	461	468	parallel
Strand 9	D	124	130	anti-parallel
Strand 10	D	115	119	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	315	first strand
Strand 2	C	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	160	165	parallel
Strand 3	D	133	138	parallel
Strand 4	D	216	219	parallel
Strand 5	D	236	238	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J78

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J78