Analysis of interatomic Contacts of Structural Units in PDB entry:
5J7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J7R entry

There are 4 chains in PDB entry 5J7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 37ILE 182
B
 THR 36ASN 184
C
 ASP 40ILE 182
D
 ASP 40ILE 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5J7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 86Right-handed alpha
Helix 2
AA2
A
119 122Right-handed 310
Helix 3
AA3
A
126 142Right-handed alpha
Helix 4
AA4
A
177 181Right-handed 310
Helix 5
AA5
B
71 86Right-handed alpha
Helix 6
AA6
B
119 122Right-handed 310
Helix 7
AA7
B
126 142Right-handed alpha
Helix 8
AA8
B
177 181Right-handed 310
Helix 9
AA9
C
71 86Right-handed alpha
Helix 10
AB1
C
119 122Right-handed 310
Helix 11
AB2
C
126 142Right-handed alpha
Helix 12
AB3
C
177 181Right-handed 310
Helix 13
AB4
D
71 86Right-handed alpha
Helix 14
AB5
D
119 122Right-handed 310
Helix 15
AB6
D
126 142Right-handed alpha
Helix 16
AB7
D
177 181Right-handed 310
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There are 6 sheets in PDB entry 5J7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 70first strand
Strand 2
A
44 52anti-parallel
Strand 3
C
62 70parallel
Strand 4
C
44 52anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 109first strand
Strand 2
A
112 117anti-parallel
Strand 3
A
149 154parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 70first strand
Strand 2
B
44 52anti-parallel
Strand 3
D
62 70parallel
Strand 4
D
44 52anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 109first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
149 154parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 109first strand
Strand 2
C
112 117anti-parallel
Strand 3
C
149 154parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 109first strand
Strand 2
D
112 117anti-parallel
Strand 3
D
149 154parallel
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