Analysis of interatomic Contacts of Structural Units in PDB entry:
5J7W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J7W entry

There are 4 chains in PDB entry 5J7W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 313
B	MET 1	ILE 313
C	MET 1	VAL 315
D	MET 1	VAL 315

There are 55 helices in PDB entry 5J7W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	16	Right-handed alpha
Helix 2	AA2	A	40	42	Right-handed 310
Helix 3	AA3	A	52	65	Right-handed alpha
Helix 4	AA4	A	69	75	Right-handed alpha
Helix 5	AA5	A	121	131	Right-handed alpha
Helix 6	AA6	A	133	139	Right-handed alpha
Helix 7	AA7	A	144	151	Right-handed alpha
Helix 8	AA8	A	161	173	Right-handed alpha
Helix 9	AA9	A	223	244	Right-handed alpha
Helix 10	AB1	A	263	272	Right-handed alpha
Helix 11	AB2	A	289	293	Right-handed 310
Helix 12	AB3	A	294	296	Right-handed 310
Helix 13	AB4	B	2	16	Right-handed alpha
Helix 14	AB5	B	40	42	Right-handed 310
Helix 15	AB6	B	52	65	Right-handed alpha
Helix 16	AB7	B	70	76	Right-handed alpha
Helix 17	AB8	B	81	90	Right-handed alpha
Helix 18	AB9	B	134	140	Right-handed alpha
Helix 19	AC1	B	144	151	Right-handed alpha
Helix 20	AC2	B	161	173	Right-handed alpha
Helix 21	AC3	B	188	192	Right-handed 310
Helix 22	AC4	B	223	244	Right-handed alpha
Helix 23	AC5	B	263	272	Right-handed alpha
Helix 24	AC6	B	289	293	Right-handed 310
Helix 25	AC7	B	294	296	Right-handed 310
Helix 26	AC8	C	2	16	Right-handed alpha
Helix 27	AC9	C	40	42	Right-handed 310
Helix 28	AD1	C	52	65	Right-handed alpha
Helix 29	AD2	C	70	76	Right-handed alpha
Helix 30	AD3	C	81	92	Right-handed alpha
Helix 31	AD4	C	102	110	Right-handed alpha
Helix 32	AD5	C	110	131	Right-handed alpha
Helix 33	AD6	C	131	139	Right-handed alpha
Helix 34	AD7	C	144	151	Right-handed alpha
Helix 35	AD8	C	161	173	Right-handed alpha
Helix 36	AD9	C	188	192	Right-handed 310
Helix 37	AE1	C	223	244	Right-handed alpha
Helix 38	AE2	C	263	272	Right-handed alpha
Helix 39	AE3	C	289	293	Right-handed 310
Helix 40	AE4	C	294	296	Right-handed 310
Helix 41	AE5	D	2	16	Right-handed alpha
Helix 42	AE6	D	40	42	Right-handed 310
Helix 43	AE7	D	52	65	Right-handed alpha
Helix 44	AE8	D	70	76	Right-handed alpha
Helix 45	AE9	D	81	91	Right-handed alpha
Helix 46	AF1	D	102	110	Right-handed alpha
Helix 47	AF2	D	110	131	Right-handed alpha
Helix 48	AF3	D	131	139	Right-handed alpha
Helix 49	AF4	D	144	151	Right-handed alpha
Helix 50	AF5	D	161	173	Right-handed alpha
Helix 51	AF6	D	188	192	Right-handed 310
Helix 52	AF7	D	224	244	Right-handed alpha
Helix 53	AF8	D	263	272	Right-handed alpha
Helix 54	AF9	D	289	293	Right-handed 310
Helix 55	AG1	D	294	296	Right-handed 310

There are 12 sheets in PDB entry 5J7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	26	38	anti-parallel
Strand 3	A	246	260	anti-parallel
Strand 4	A	209	220	parallel
Strand 5	A	198	206	anti-parallel
Strand 6	A	180	182	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	159	160	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	283	first strand
Strand 2	A	298	301	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	26	38	anti-parallel
Strand 3	B	246	260	anti-parallel
Strand 4	B	209	220	parallel
Strand 5	B	198	206	anti-parallel
Strand 6	B	180	182	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	159	160	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	283	first strand
Strand 2	B	298	301	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	19	first strand
Strand 2	C	27	38	anti-parallel
Strand 3	C	246	260	anti-parallel
Strand 4	C	209	220	parallel
Strand 5	C	198	206	anti-parallel
Strand 6	C	180	182	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	159	160	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	283	first strand
Strand 2	C	298	301	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	19	first strand
Strand 2	D	27	38	anti-parallel
Strand 3	D	246	260	anti-parallel
Strand 4	D	209	220	parallel
Strand 5	D	198	206	anti-parallel
Strand 6	D	180	182	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	159	160	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	283	first strand
Strand 2	D	298	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J7W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J7W