Analysis of interatomic Contacts of Structural Units in PDB entry:
5J7X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J7X entry

There is 1 chain in PDB entry 5J7X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9HIS 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5J7X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
73 78Right-handed alpha
Helix 4
AA4
A
88 104Right-handed alpha
Helix 5
AA5
A
105 107Right-handed 310
Helix 6
AA6
A
159 163Right-handed 310
Helix 7
AA7
A
192 206Right-handed alpha
Helix 8
AA8
A
241 247Right-handed alpha
Helix 9
AA9
A
261 265Right-handed 310
Helix 10
AB1
A
266 281Right-handed alpha
Helix 11
AB2
A
283 288Right-handed alpha
Helix 12
AB3
A
296 314Right-handed alpha
Helix 13
AB4
A
317 325Right-handed alpha
Helix 14
AB5
A
343 348Right-handed alpha
Helix 15
AB6
A
393 399Right-handed alpha
Helix 16
AB7
A
409 414Right-handed alpha
Helix 17
AB8
A
441 445Right-handed 310
Helix 18
AB9
A
446 468Right-handed alpha
Helix 19
AC1
A
476 493Right-handed alpha
Helix 20
AC2
A
494 499Right-handed 310
Helix 21
AC3
A
500 508Right-handed alpha
Helix 22
AC4
A
521 535Right-handed alpha
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There are 6 sheets in PDB entry 5J7X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
39 42parallel
Strand 3
A
11 18parallel
Strand 4
A
136 144parallel
Strand 5
A
126 131anti-parallel
Strand 6
A
115 121anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
39 42parallel
Strand 3
A
11 18parallel
Strand 4
A
136 144parallel
Strand 5
A
432 433parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
383 386parallel
Strand 3
A
185 189parallel
Strand 4
A
208 213parallel
Strand 5
A
353 357parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
340 341parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
370 373anti-parallel
Strand 3
A
378 380anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 475first strand
Strand 2
A
540 544anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il