Analysis of interatomic Contacts of Structural Units in PDB entry:
5J83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J83 entry

There are 4 chains in PDB entry 5J83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ASP 128
A
 THR 130HIS 579
B
 ALA 5ASP 128
B
 THR 130HIS 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5J83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
21 33Right-handed alpha
Helix 3
AA3
A
37 42Right-handed 310
Helix 4
AA4
A
57 61Right-handed 310
Helix 5
AA5
A
62 77Right-handed alpha
Helix 6
AA6
A
101 116Right-handed alpha
Helix 7
AA7
A
129 142Right-handed alpha
Helix 8
AA8
A
166 178Right-handed alpha
Helix 9
AA9
A
182 189Right-handed alpha
Helix 10
AB1
A
189 194Right-handed alpha
Helix 11
AB2
A
204 216Right-handed alpha
Helix 12
AB3
A
230 251Right-handed alpha
Helix 13
AB4
A
253 257Right-handed 310
Helix 14
AB5
A
259 273Right-handed alpha
Helix 15
AB6
A
277 291Right-handed alpha
Helix 16
AB7
A
295 304Right-handed alpha
Helix 17
AB8
A
319 327Right-handed alpha
Helix 18
AB9
A
328 338Right-handed alpha
Helix 19
AC1
A
353 359Right-handed alpha
Helix 20
AC2
A
417 422Right-handed alpha
Helix 21
AC3
A
460 465Right-handed alpha
Helix 22
AC4
A
499 504Right-handed 310
Helix 23
AC5
A
524 535Right-handed alpha
Helix 24
AC6
A
545 554Right-handed alpha
Helix 25
AC7
A
563 567Right-handed 310
Helix 26
AC8
B
13 18Right-handed alpha
Helix 27
AC9
B
21 32Right-handed alpha
Helix 28
AD1
B
33 35Right-handed 310
Helix 29
AD2
B
37 42Right-handed 310
Helix 30
AD3
B
57 61Right-handed 310
Helix 31
AD4
B
62 77Right-handed alpha
Helix 32
AD5
B
97 100Right-handed 310
Helix 33
AD6
B
101 115Right-handed alpha
Helix 34
AD7
B
129 142Right-handed alpha
Helix 35
AD8
B
166 175Right-handed alpha
Helix 36
AD9
B
182 189Right-handed alpha
Helix 37
AE1
B
189 194Right-handed alpha
Helix 38
AE2
B
204 216Right-handed alpha
Helix 39
AE3
B
230 251Right-handed alpha
Helix 40
AE4
B
259 274Right-handed alpha
Helix 41
AE5
B
278 291Right-handed alpha
Helix 42
AE6
B
296 304Right-handed alpha
Helix 43
AE7
B
319 326Right-handed alpha
Helix 44
AE8
B
328 339Right-handed alpha
Helix 45
AE9
B
353 359Right-handed alpha
Helix 46
AF1
B
371 375Right-handed 310
Helix 47
AF2
B
417 425Right-handed alpha
Helix 48
AF3
B
460 465Right-handed alpha
Helix 49
AF4
B
494 498Right-handed 310
Helix 50
AF5
B
499 504Right-handed 310
Helix 51
AF6
B
525 532Right-handed alpha
Helix 52
AF7
B
544 554Right-handed alpha
Helix 53
AF8
B
556 560Right-handed 310
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There are 6 sheets in PDB entry 5J83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
46 51parallel
Strand 3
A
120 125parallel
Strand 4
A
145 149parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
161 163anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
393 396anti-parallel
Strand 3
A
487 492anti-parallel
Strand 4
A
473 475parallel
Strand 5
A
437 440parallel
Strand 6
A
409 415parallel
Strand 7
A
509 513anti-parallel
Strand 8
A
518 521anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 85first strand
Strand 2
B
46 51parallel
Strand 3
B
120 125parallel
Strand 4
B
145 149parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
161 163anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 384first strand
Strand 2
B
393 396anti-parallel
Strand 3
B
487 492anti-parallel
Strand 4
B
472 475parallel
Strand 5
B
437 440parallel
Strand 6
B
407 415parallel
Strand 7
B
509 513anti-parallel
Strand 8
B
518 521anti-parallel
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