Analysis of interatomic Contacts of Structural Units in PDB entry:
5J84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J84 entry

There are 16 chains in PDB entry 5J84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 5ASP 128
A
THR 130HIS 579
B
ALA 5ASP 128
B
THR 130HIS 579
C
ALA 5ASP 128
C
THR 130HIS 579
D
ALA 5ASP 128
D
THR 130HIS 579
E
ALA 5ASP 128
E
THR 130HIS 579
F
ALA 5ASP 128
F
THR 130HIS 579
G
ALA 5ASP 128
G
THR 130HIS 579
H
ALA 5ASP 128
H
THR 130HIS 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are246 helices in PDB entry 5J84. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
21 32Right-handed alpha
Helix 3
AA3
A
33 35Right-handed 310
Helix 4
AA4
A
37 42Right-handed 310
Helix 5
AA5
A
57 61Right-handed 310
Helix 6
AA6
A
62 77Right-handed alpha
Helix 7
AA7
A
97 100Right-handed 310
Helix 8
AA8
A
101 115Right-handed alpha
Helix 9
AA9
A
129 140Right-handed alpha
Helix 10
AB1
A
166 178Right-handed alpha
Helix 11
AB2
A
182 190Right-handed alpha
Helix 12
AB3
A
191 193Right-handed 310
Helix 13
AB4
A
204 216Right-handed alpha
Helix 14
AB5
A
230 251Right-handed alpha
Helix 15
AB6
A
253 258Right-handed alpha
Helix 16
AB7
A
259 274Right-handed alpha
Helix 17
AB8
A
277 291Right-handed alpha
Helix 18
AB9
A
295 304Right-handed alpha
Helix 19
AC1
A
319 327Right-handed alpha
Helix 20
AC2
A
328 339Right-handed alpha
Helix 21
AC3
A
353 359Right-handed alpha
Helix 22
AC4
A
371 375Right-handed 310
Helix 23
AC5
A
397 401Right-handed 310
Helix 24
AC6
A
402 405Right-handed 310
Helix 25
AC7
A
417 425Right-handed alpha
Helix 26
AC8
A
460 465Right-handed alpha
Helix 27
AC9
A
494 498Right-handed 310
Helix 28
AD1
A
499 504Right-handed 310
Helix 29
AD2
A
524 534Right-handed alpha
Helix 30
AD3
A
544 554Right-handed alpha
Helix 31
AD4
A
563 567Right-handed 310
Helix 32
AD5
B
13 18Right-handed alpha
Helix 33
AD6
B
21 32Right-handed alpha
Helix 34
AD7
B
33 35Right-handed 310
Helix 35
AD8
B
37 42Right-handed 310
Helix 36
AD9
B
57 61Right-handed 310
Helix 37
AE1
B
62 78Right-handed alpha
Helix 38
AE2
B
97 100Right-handed 310
Helix 39
AE3
B
101 115Right-handed alpha
Helix 40
AE4
B
129 140Right-handed alpha
Helix 41
AE5
B
166 178Right-handed alpha
Helix 42
AE6
B
182 190Right-handed alpha
Helix 43
AE7
B
191 193Right-handed 310
Helix 44
AE8
B
204 216Right-handed alpha
Helix 45
AE9
B
230 251Right-handed alpha
Helix 46
AF1
B
253 258Right-handed alpha
Helix 47
AF2
B
259 274Right-handed alpha
Helix 48
AF3
B
277 291Right-handed alpha
Helix 49
AF4
B
295 304Right-handed alpha
Helix 50
AF5
B
319 327Right-handed alpha
Helix 51
AF6
B
328 339Right-handed alpha
Helix 52
AF7
B
353 359Right-handed alpha
Helix 53
AF8
B
371 375Right-handed 310
Helix 54
AF9
B
397 401Right-handed 310
Helix 55
AG1
B
402 405Right-handed 310
Helix 56
AG2
B
417 425Right-handed alpha
Helix 57
AG3
B
460 465Right-handed alpha
Helix 58
AG4
B
494 498Right-handed 310
Helix 59
AG5
B
499 504Right-handed 310
Helix 60
AG6
B
524 534Right-handed alpha
Helix 61
AG7
B
544 554Right-handed alpha
Helix 62
AG8
B
563 567Right-handed 310
Helix 63
AG9
C
13 18Right-handed alpha
Helix 64
AH1
C
21 32Right-handed alpha
Helix 65
AH2
C
33 35Right-handed 310
Helix 66
AH3
C
37 42Right-handed 310
Helix 67
AH4
C
57 61Right-handed 310
Helix 68
AH5
C
62 77Right-handed alpha
Helix 69
AH6
C
97 100Right-handed 310
Helix 70
AH7
C
101 115Right-handed alpha
Helix 71
AH8
C
129 140Right-handed alpha
Helix 72
AH9
C
166 178Right-handed alpha
Helix 73
AI1
C
182 191Right-handed alpha
Helix 74
AI2
C
204 216Right-handed alpha
Helix 75
AI3
C
230 251Right-handed alpha
Helix 76
AI4
C
253 258Right-handed alpha
Helix 77
AI5
C
259 274Right-handed alpha
Helix 78
AI6
C
277 291Right-handed alpha
Helix 79
AI7
C
295 304Right-handed alpha
Helix 80
AI8
C
319 327Right-handed alpha
Helix 81
AI9
C
327 339Right-handed alpha
Helix 82
AJ1
C
353 359Right-handed alpha
Helix 83
AJ2
C
371 375Right-handed 310
Helix 84
AJ3
C
397 401Right-handed 310
Helix 85
AJ4
C
402 405Right-handed 310
Helix 86
AJ5
C
417 425Right-handed alpha
Helix 87
AJ6
C
460 465Right-handed alpha
Helix 88
AJ7
C
494 498Right-handed 310
Helix 89
AJ8
C
499 504Right-handed 310
Helix 90
AJ9
C
524 534Right-handed alpha
Helix 91
AK1
C
544 554Right-handed alpha
Helix 92
AK2
C
563 567Right-handed 310
Helix 93
AK3
D
13 18Right-handed alpha
Helix 94
AK4
D
21 32Right-handed alpha
Helix 95
AK5
D
33 35Right-handed 310
Helix 96
AK6
D
37 42Right-handed 310
Helix 97
AK7
D
57 61Right-handed 310
Helix 98
AK8
D
62 78Right-handed alpha
Helix 99
AK9
D
97 100Right-handed 310
Helix 100
AL1
D
101 115Right-handed alpha
Helix 101
AL2
D
129 140Right-handed alpha
Helix 102
AL3
D
166 178Right-handed alpha
Helix 103
AL4
D
182 190Right-handed alpha
Helix 104
AL5
D
191 193Right-handed 310
Helix 105
AL6
D
204 216Right-handed alpha
Helix 106
AL7
D
230 251Right-handed alpha
Helix 107
AL8
D
253 258Right-handed alpha
Helix 108
AL9
D
259 274Right-handed alpha
Helix 109
AM1
D
277 291Right-handed alpha
Helix 110
AM2
D
295 304Right-handed alpha
Helix 111
AM3
D
319 327Right-handed alpha
Helix 112
AM4
D
327 339Right-handed alpha
Helix 113
AM5
D
353 359Right-handed alpha
Helix 114
AM6
D
371 375Right-handed 310
Helix 115
AM7
D
397 401Right-handed 310
Helix 116
AM8
D
402 405Right-handed 310
Helix 117
AM9
D
417 425Right-handed alpha
Helix 118
AN1
D
460 465Right-handed alpha
Helix 119
AN2
D
494 498Right-handed 310
Helix 120
AN3
D
499 504Right-handed 310
Helix 121
AN4
D
524 533Right-handed alpha
Helix 122
AN5
D
544 554Right-handed alpha
Helix 123
AN6
D
563 567Right-handed 310
Helix 124
AN7
E
13 18Right-handed alpha
Helix 125
AN8
E
21 32Right-handed alpha
Helix 126
AN9
E
33 35Right-handed 310
Helix 127
AO1
E
37 42Right-handed 310
Helix 128
AO2
E
57 61Right-handed 310
Helix 129
AO3
E
62 77Right-handed alpha
Helix 130
AO4
E
97 100Right-handed 310
Helix 131
AO5
E
101 115Right-handed alpha
Helix 132
AO6
E
129 140Right-handed alpha
Helix 133
AO7
E
166 178Right-handed alpha
Helix 134
AO8
E
182 190Right-handed alpha
Helix 135
AO9
E
191 193Right-handed 310
Helix 136
AP1
E
204 216Right-handed alpha
Helix 137
AP2
E
230 251Right-handed alpha
Helix 138
AP3
E
253 258Right-handed alpha
Helix 139
AP4
E
259 274Right-handed alpha
Helix 140
AP5
E
277 291Right-handed alpha
Helix 141
AP6
E
295 304Right-handed alpha
Helix 142
AP7
E
319 327Right-handed alpha
Helix 143
AP8
E
328 339Right-handed alpha
Helix 144
AP9
E
353 359Right-handed alpha
Helix 145
AQ1
E
371 375Right-handed 310
Helix 146
AQ2
E
397 401Right-handed 310
Helix 147
AQ3
E
402 405Right-handed 310
Helix 148
AQ4
E
417 425Right-handed alpha
Helix 149
AQ5
E
460 465Right-handed alpha
Helix 150
AQ6
E
494 498Right-handed 310
Helix 151
AQ7
E
499 504Right-handed 310
Helix 152
AQ8
E
524 534Right-handed alpha
Helix 153
AQ9
E
544 554Right-handed alpha
Helix 154
AR1
E
563 567Right-handed 310
Helix 155
AR2
F
13 18Right-handed alpha
Helix 156
AR3
F
21 32Right-handed alpha
Helix 157
AR4
F
33 35Right-handed 310
Helix 158
AR5
F
37 42Right-handed 310
Helix 159
AR6
F
57 61Right-handed 310
Helix 160
AR7
F
62 78Right-handed alpha
Helix 161
AR8
F
97 100Right-handed 310
Helix 162
AR9
F
101 115Right-handed alpha
Helix 163
AS1
F
129 140Right-handed alpha
Helix 164
AS2
F
166 178Right-handed alpha
Helix 165
AS3
F
182 190Right-handed alpha
Helix 166
AS4
F
191 193Right-handed 310
Helix 167
AS5
F
204 216Right-handed alpha
Helix 168
AS6
F
230 251Right-handed alpha
Helix 169
AS7
F
253 258Right-handed alpha
Helix 170
AS8
F
259 274Right-handed alpha
Helix 171
AS9
F
277 291Right-handed alpha
Helix 172
AT1
F
295 304Right-handed alpha
Helix 173
AT2
F
319 327Right-handed alpha
Helix 174
AT3
F
327 339Right-handed alpha
Helix 175
AT4
F
353 359Right-handed alpha
Helix 176
AT5
F
371 375Right-handed 310
Helix 177
AT6
F
397 401Right-handed 310
Helix 178
AT7
F
402 405Right-handed 310
Helix 179
AT8
F
417 425Right-handed alpha
Helix 180
AT9
F
460 465Right-handed alpha
Helix 181
AU1
F
494 498Right-handed 310
Helix 182
AU2
F
499 504Right-handed 310
Helix 183
AU3
F
524 534Right-handed alpha
Helix 184
AU4
F
544 554Right-handed alpha
Helix 185
AU5
F
563 567Right-handed 310
Helix 186
AU6
G
13 18Right-handed alpha
Helix 187
AU7
G
21 32Right-handed alpha
Helix 188
AU8
G
33 35Right-handed 310
Helix 189
AU9
G
37 42Right-handed 310
Helix 190
AV1
G
57 61Right-handed 310
Helix 191
AV2
G
62 77Right-handed alpha
Helix 192
AV3
G
97 100Right-handed 310
Helix 193
AV4
G
101 115Right-handed alpha
Helix 194
AV5
G
129 140Right-handed alpha
Helix 195
AV6
G
166 178Right-handed alpha
Helix 196
AV7
G
182 191Right-handed alpha
Helix 197
AV8
G
204 216Right-handed alpha
Helix 198
AV9
G
230 251Right-handed alpha
Helix 199
AW1
G
253 258Right-handed alpha
Helix 200
AW2
G
259 274Right-handed alpha
Helix 201
AW3
G
277 291Right-handed alpha
Helix 202
AW4
G
295 304Right-handed alpha
Helix 203
AW5
G
319 327Right-handed alpha
Helix 204
AW6
G
327 339Right-handed alpha
Helix 205
AW7
G
353 359Right-handed alpha
Helix 206
AW8
G
371 375Right-handed 310
Helix 207
AW9
G
398 401Right-handed 310
Helix 208
AX1
G
402 405Right-handed 310
Helix 209
AX2
G
417 425Right-handed alpha
Helix 210
AX3
G
460 465Right-handed alpha
Helix 211
AX4
G
494 498Right-handed 310
Helix 212
AX5
G
499 504Right-handed 310
Helix 213
AX6
G
524 534Right-handed alpha
Helix 214
AX7
G
544 554Right-handed alpha
Helix 215
AX8
G
563 567Right-handed 310
Helix 216
AX9
H
13 18Right-handed alpha
Helix 217
AY1
H
21 32Right-handed alpha
Helix 218
AY2
H
33 35Right-handed 310
Helix 219
AY3
H
37 42Right-handed 310
Helix 220
AY4
H
57 61Right-handed 310
Helix 221
AY5
H
62 77Right-handed alpha
Helix 222
AY6
H
97 100Right-handed 310
Helix 223
AY7
H
101 115Right-handed alpha
Helix 224
AY8
H
129 140Right-handed alpha
Helix 225
AY9
H
166 178Right-handed alpha
Helix 226
AZ1
H
182 190Right-handed alpha
Helix 227
AZ2
H
191 193Right-handed 310
Helix 228
AZ3
H
204 216Right-handed alpha
Helix 229
AZ4
H
230 251Right-handed alpha
Helix 230
AZ5
H
253 258Right-handed alpha
Helix 231
AZ6
H
259 274Right-handed alpha
Helix 232
AZ7
H
277 291Right-handed alpha
Helix 233
AZ8
H
295 304Right-handed alpha
Helix 234
AZ9
H
319 327Right-handed alpha
Helix 235
BA1
H
328 339Right-handed alpha
Helix 236
BA2
H
353 359Right-handed alpha
Helix 237
BA3
H
371 375Right-handed 310
Helix 238
BA4
H
397 401Right-handed 310
Helix 239
BA5
H
402 405Right-handed 310
Helix 240
BA6
H
417 425Right-handed alpha
Helix 241
BA7
H
460 465Right-handed alpha
Helix 242
BA8
H
494 498Right-handed 310
Helix 243
BA9
H
499 504Right-handed 310
Helix 244
BB1
H
524 534Right-handed alpha
Helix 245
BB2
H
544 554Right-handed alpha
Helix 246
BB3
H
563 567Right-handed 310
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There are 24 sheets in PDB entry 5J84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
80 85first strand
Strand 2
A
46 51parallel
Strand 3
A
120 125parallel
Strand 4
A
145 149parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
156 157first strand
Strand 2
A
162 163anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
383 385first strand
Strand 2
A
393 396anti-parallel
Strand 3
A
487 492anti-parallel
Strand 4
A
473 475parallel
Strand 5
A
437 440parallel
Strand 6
A
407 415parallel
Strand 7
A
509 513anti-parallel
Strand 8
A
518 521anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
80 85first strand
Strand 2
B
46 51parallel
Strand 3
B
120 125parallel
Strand 4
B
145 149parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
156 158first strand
Strand 2
B
161 163anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
383 385first strand
Strand 2
B
393 396anti-parallel
Strand 3
B
487 492anti-parallel
Strand 4
B
473 475parallel
Strand 5
B
437 440parallel
Strand 6
B
407 415parallel
Strand 7
B
509 513anti-parallel
Strand 8
B
518 521anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
80 85first strand
Strand 2
C
46 51parallel
Strand 3
C
120 125parallel
Strand 4
C
145 149parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
156 157first strand
Strand 2
C
162 163anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
383 385first strand
Strand 2
C
393 396anti-parallel
Strand 3
C
487 492anti-parallel
Strand 4
C
473 475parallel
Strand 5
C
437 440parallel
Strand 6
C
407 415parallel
Strand 7
C
509 513anti-parallel
Strand 8
C
518 521anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
80 85first strand
Strand 2
D
46 51parallel
Strand 3
D
120 125parallel
Strand 4
D
145 149parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
156 157first strand
Strand 2
D
162 163anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
383 385first strand
Strand 2
D
393 396anti-parallel
Strand 3
D
487 492anti-parallel
Strand 4
D
473 475parallel
Strand 5
D
437 440parallel
Strand 6
D
407 415parallel
Strand 7
D
509 513anti-parallel
Strand 8
D
518 521anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
80 85first strand
Strand 2
E
46 51parallel
Strand 3
E
120 125parallel
Strand 4
E
145 149parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
156 157first strand
Strand 2
E
162 163anti-parallel
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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
383 385first strand
Strand 2
E
393 396anti-parallel
Strand 3
E
487 492anti-parallel
Strand 4
E
473 475parallel
Strand 5
E
437 440parallel
Strand 6
E
407 415parallel
Strand 7
E
509 513anti-parallel
Strand 8
E
518 521anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
80 85first strand
Strand 2
F
46 51parallel
Strand 3
F
120 125parallel
Strand 4
F
145 149parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
156 158first strand
Strand 2
F
161 163anti-parallel
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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
383 385first strand
Strand 2
F
393 396anti-parallel
Strand 3
F
487 492anti-parallel
Strand 4
F
473 475parallel
Strand 5
F
437 440parallel
Strand 6
F
407 415parallel
Strand 7
F
509 513anti-parallel
Strand 8
F
518 521anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
80 85first strand
Strand 2
G
46 51parallel
Strand 3
G
120 125parallel
Strand 4
G
145 149parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
156 158first strand
Strand 2
G
161 163anti-parallel
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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
383 385first strand
Strand 2
G
393 396anti-parallel
Strand 3
G
487 492anti-parallel
Strand 4
G
473 475parallel
Strand 5
G
437 440parallel
Strand 6
G
407 415parallel
Strand 7
G
509 513anti-parallel
Strand 8
G
518 521anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
80 85first strand
Strand 2
H
46 51parallel
Strand 3
H
120 125parallel
Strand 4
H
145 149parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
156 157first strand
Strand 2
H
162 163anti-parallel
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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
383 385first strand
Strand 2
H
393 396anti-parallel
Strand 3
H
487 492anti-parallel
Strand 4
H
473 475parallel
Strand 5
H
437 440parallel
Strand 6
H
407 415parallel
Strand 7
H
509 513anti-parallel
Strand 8
H
518 521anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il