Analysis of interatomic Contacts of Structural Units in PDB entry:
5J85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J85 entry

There are 2 chains in PDB entry 5J85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ASP 128
A
 THR 130HIS 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5J85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
21 32Right-handed alpha
Helix 3
AA3
A
33 35Right-handed 310
Helix 4
AA4
A
37 42Right-handed 310
Helix 5
AA5
A
57 61Right-handed 310
Helix 6
AA6
A
62 77Right-handed alpha
Helix 7
AA7
A
98 115Right-handed alpha
Helix 8
AA8
A
129 140Right-handed alpha
Helix 9
AA9
A
168 178Right-handed alpha
Helix 10
AB1
A
182 194Right-handed alpha
Helix 11
AB2
A
204 216Right-handed alpha
Helix 12
AB3
A
230 251Right-handed alpha
Helix 13
AB4
A
253 257Right-handed 310
Helix 14
AB5
A
259 274Right-handed alpha
Helix 15
AB6
A
277 291Right-handed alpha
Helix 16
AB7
A
295 304Right-handed alpha
Helix 17
AB8
A
319 326Right-handed alpha
Helix 18
AB9
A
327 338Right-handed alpha
Helix 19
AC1
A
353 359Right-handed alpha
Helix 20
AC2
A
402 405Right-handed 310
Helix 21
AC3
A
417 425Right-handed alpha
Helix 22
AC4
A
460 465Right-handed alpha
Helix 23
AC5
A
494 498Right-handed 310
Helix 24
AC6
A
499 504Right-handed 310
Helix 25
AC7
A
524 534Right-handed alpha
Helix 26
AC8
A
544 554Right-handed alpha
Helix 27
AC9
A
556 560Right-handed 310
Helix 28
AD1
A
563 567Right-handed 310
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There are 3 sheets in PDB entry 5J85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
46 51parallel
Strand 3
A
120 125parallel
Strand 4
A
145 149parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
162 163anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 387first strand
Strand 2
A
390 396anti-parallel
Strand 3
A
487 492anti-parallel
Strand 4
A
472 475parallel
Strand 5
A
437 440parallel
Strand 6
A
407 415parallel
Strand 7
A
509 513anti-parallel
Strand 8
A
518 521anti-parallel
Strand 9
A
383 387parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il