Analysis of interatomic Contacts of Structural Units in PDB entry:
5J8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J8J entry

There is 1 chain in PDB entry 5J8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 450SER 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5J8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
453 474Right-handed alpha
Helix 2
AA2
A
486 488Right-handed 310
Helix 3
AA3
A
495 499Right-handed 310
Helix 4
AA4
A
524 528Right-handed 310
Helix 5
AA5
A
534 543Right-handed alpha
Helix 6
AA6
A
562 580Right-handed alpha
Helix 7
AA7
A
598 609Right-handed alpha
Helix 8
AA8
A
636 645Right-handed alpha
Helix 9
AA9
A
666 670Right-handed 310
Helix 10
AB1
A
679 697Right-handed alpha
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There are 2 sheets in PDB entry 5J8J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 477first strand
Strand 2
A
490 492anti-parallel
Strand 3
A
547 553anti-parallel
Strand 4
A
502 508parallel
Strand 5
A
590 595parallel
Strand 6
A
615 623parallel
Strand 7
A
646 650parallel
Strand 8
A
672 674parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 513first strand
Strand 2
A
529 531anti-parallel
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