Analysis of interatomic Contacts of Structural Units in PDB entry:
5J8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J8Y entry

There are 4 chains in PDB entry 5J8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 800LEU 877
B
 ASP 800LEU 877
C
 MET 1136VAL 1204
D
 MET 1136ASN 1205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5J8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
802 806Right-handed 310
Helix 2
AA2
A
807 819Right-handed alpha
Helix 3
AA3
A
820 824Right-handed 310
Helix 4
AA4
A
825 832Right-handed alpha
Helix 5
AA5
A
835 842Right-handed alpha
Helix 6
AA6
A
843 851Right-handed alpha
Helix 7
AA7
A
854 869Right-handed alpha
Helix 8
AA8
B
802 806Right-handed 310
Helix 9
AA9
B
807 819Right-handed alpha
Helix 10
AB1
B
820 824Right-handed 310
Helix 11
AB2
B
825 832Right-handed alpha
Helix 12
AB3
B
835 842Right-handed alpha
Helix 13
AB4
B
843 851Right-handed alpha
Helix 14
AB5
B
854 869Right-handed alpha
Helix 15
AB6
C
1136 1140Right-handed 310
Helix 16
AB7
C
1141 1152Right-handed alpha
Helix 17
AB8
C
1154 1156Right-handed 310
Helix 18
AB9
C
1157 1164Right-handed alpha
Helix 19
AC1
C
1167 1172Right-handed alpha
Helix 20
AC2
C
1175 1183Right-handed alpha
Helix 21
AC3
C
1186 1203Right-handed alpha
Helix 22
AC4
D
1136 1140Right-handed 310
Helix 23
AC5
D
1141 1152Right-handed alpha
Helix 24
AC6
D
1153 1156Right-handed 310
Helix 25
AC7
D
1157 1164Right-handed alpha
Helix 26
AC8
D
1167 1174Right-handed alpha
Helix 27
AC9
D
1175 1183Right-handed alpha
Helix 28
AD1
D
1186 1203Right-handed alpha
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There are no sheets in PDB entry 5J8Y
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il