Analysis of interatomic Contacts of Structural Units in PDB entry:
5J90


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J90 entry

There are 2 chains in PDB entry 5J90 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 45PHE 526
B
 ASN 45PHE 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5J90. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 49Right-handed 310
Helix 2
AA2
A
50 56Right-handed alpha
Helix 3
AA3
A
63 71Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
A
87 92Right-handed 310
Helix 6
AA6
A
93 97Right-handed 310
Helix 7
AA7
A
100 115Right-handed alpha
Helix 8
AA8
A
115 127Right-handed alpha
Helix 9
AA9
A
130 153Right-handed alpha
Helix 10
AB1
A
171 196Right-handed alpha
Helix 11
AB2
A
213 232Right-handed alpha
Helix 12
AB3
A
236 250Right-handed alpha
Helix 13
AB4
A
257 261Right-handed 310
Helix 14
AB5
A
272 279Right-handed alpha
Helix 15
AB6
A
286 296Right-handed alpha
Helix 16
AB7
A
300 305Right-handed alpha
Helix 17
AB8
A
326 330Right-handed 310
Helix 18
AB9
A
337 341Right-handed 310
Helix 19
AC1
A
349 363Right-handed alpha
Helix 20
AC2
A
370 387Right-handed alpha
Helix 21
AC3
A
390 397Right-handed alpha
Helix 22
AC4
A
410 414Right-handed 310
Helix 23
AC5
A
430 447Right-handed alpha
Helix 24
AC6
A
449 461Right-handed alpha
Helix 25
AC7
A
489 496Right-handed alpha
Helix 26
AC8
A
496 508Right-handed alpha
Helix 27
AC9
B
47 49Right-handed 310
Helix 28
AD1
B
50 56Right-handed alpha
Helix 29
AD2
B
63 71Right-handed alpha
Helix 30
AD3
B
74 79Right-handed alpha
Helix 31
AD4
B
87 92Right-handed 310
Helix 32
AD5
B
93 97Right-handed 310
Helix 33
AD6
B
100 115Right-handed alpha
Helix 34
AD7
B
115 127Right-handed alpha
Helix 35
AD8
B
130 153Right-handed alpha
Helix 36
AD9
B
171 196Right-handed alpha
Helix 37
AE1
B
213 232Right-handed alpha
Helix 38
AE2
B
236 250Right-handed alpha
Helix 39
AE3
B
257 261Right-handed 310
Helix 40
AE4
B
272 279Right-handed alpha
Helix 41
AE5
B
286 296Right-handed alpha
Helix 42
AE6
B
300 305Right-handed alpha
Helix 43
AE7
B
326 330Right-handed 310
Helix 44
AE8
B
337 341Right-handed 310
Helix 45
AE9
B
349 363Right-handed alpha
Helix 46
AF1
B
370 387Right-handed alpha
Helix 47
AF2
B
390 397Right-handed alpha
Helix 48
AF3
B
410 414Right-handed 310
Helix 49
AF4
B
430 447Right-handed alpha
Helix 50
AF5
B
449 461Right-handed alpha
Helix 51
AF6
B
489 496Right-handed alpha
Helix 52
AF7
B
496 508Right-handed alpha
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There are 4 sheets in PDB entry 5J90. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
284 285anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
344 348anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
284 285anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
344 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il