Analysis of interatomic Contacts of Structural Units in PDB entry:
5J92

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J92 entry

There are 4 chains in PDB entry 5J92 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 291
B	SER 2	GLY 291
C	SER 2	ARG 290
D	SER 2	ARG 290

There are 36 helices in PDB entry 5J92. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	40	Right-handed alpha
Helix 2	AA2	A	51	60	Right-handed alpha
Helix 3	AA3	A	102	110	Right-handed alpha
Helix 4	AA4	A	146	152	Right-handed alpha
Helix 5	AA5	A	154	162	Right-handed alpha
Helix 6	AA6	A	169	177	Right-handed alpha
Helix 7	AA7	A	183	190	Right-handed alpha
Helix 8	AA8	A	222	238	Right-handed alpha
Helix 9	AA9	A	239	241	Right-handed 310
Helix 10	AB1	B	26	40	Right-handed alpha
Helix 11	AB2	B	51	60	Right-handed alpha
Helix 12	AB3	B	102	110	Right-handed alpha
Helix 13	AB4	B	146	153	Right-handed alpha
Helix 14	AB5	B	154	162	Right-handed alpha
Helix 15	AB6	B	169	177	Right-handed alpha
Helix 16	AB7	B	183	190	Right-handed alpha
Helix 17	AB8	B	222	238	Right-handed alpha
Helix 18	AB9	B	239	241	Right-handed 310
Helix 19	AC1	C	26	40	Right-handed alpha
Helix 20	AC2	C	51	60	Right-handed alpha
Helix 21	AC3	C	102	110	Right-handed alpha
Helix 22	AC4	C	146	152	Right-handed alpha
Helix 23	AC5	C	154	162	Right-handed alpha
Helix 24	AC6	C	169	177	Right-handed alpha
Helix 25	AC7	C	183	190	Right-handed alpha
Helix 26	AC8	C	222	238	Right-handed alpha
Helix 27	AC9	C	239	241	Right-handed 310
Helix 28	AD1	D	26	40	Right-handed alpha
Helix 29	AD2	D	51	61	Right-handed alpha
Helix 30	AD3	D	103	110	Right-handed alpha
Helix 31	AD4	D	146	153	Right-handed alpha
Helix 32	AD5	D	154	162	Right-handed alpha
Helix 33	AD6	D	169	177	Right-handed alpha
Helix 34	AD7	D	183	190	Right-handed alpha
Helix 35	AD8	D	222	238	Right-handed alpha
Helix 36	AD9	D	239	241	Right-handed 310

There are 16 sheets in PDB entry 5J92. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	13	17	anti-parallel
Strand 3	A	42	45	parallel
Strand 4	A	253	257	anti-parallel
Strand 5	A	124	133	anti-parallel
Strand 6	A	276	283	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	141	145	anti-parallel
Strand 3	A	261	265	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	165	168	anti-parallel
Strand 3	A	215	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	207	209	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	13	17	anti-parallel
Strand 3	B	42	45	parallel
Strand 4	B	253	257	anti-parallel
Strand 5	B	124	133	anti-parallel
Strand 6	B	276	283	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	141	145	anti-parallel
Strand 3	B	261	265	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	196	first strand
Strand 2	B	165	168	anti-parallel
Strand 3	B	215	218	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	207	209	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	13	17	anti-parallel
Strand 3	C	42	45	parallel
Strand 4	C	253	257	anti-parallel
Strand 5	C	124	133	anti-parallel
Strand 6	C	276	283	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	261	265	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	165	168	anti-parallel
Strand 3	C	215	218	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	200	first strand
Strand 2	C	207	209	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	42	45	parallel
Strand 4	D	253	257	anti-parallel
Strand 5	D	124	133	anti-parallel
Strand 6	D	276	283	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	246	first strand
Strand 2	D	141	145	anti-parallel
Strand 3	D	261	265	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	196	first strand
Strand 2	D	165	168	anti-parallel
Strand 3	D	215	218	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J92

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J92