Analysis of interatomic Contacts of Structural Units in PDB entry:
5J96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J96 entry

There are 3 chains in PDB entry 5J96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	SER 246
B	MET 1	GLU 261
C	ASP 1	PRO 413

There are 14 helices in PDB entry 5J96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	89	95	Right-handed alpha
Helix 3	AA3	A	96	98	Right-handed 310
Helix 4	AA4	A	137	139	Right-handed 310
Helix 5	AA5	A	242	244	Right-handed 310
Helix 6	AA6	B	50	55	Right-handed alpha
Helix 7	AA7	B	68	70	Right-handed 310
Helix 8	AA8	B	141	144	Right-handed 310
Helix 9	AA9	B	152	157	Right-handed alpha
Helix 10	AB1	C	54	59	Right-handed alpha
Helix 11	AB2	C	94	98	Right-handed 310
Helix 12	AB3	C	113	120	Right-handed alpha
Helix 13	AB4	C	160	165	Right-handed alpha
Helix 14	AB5	C	368	384	Right-handed alpha

There are 15 sheets in PDB entry 5J96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	215	222	anti-parallel
Strand 3	A	105	111	anti-parallel
Strand 4	A	162	167	anti-parallel
Strand 5	C	31	32	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	61	67	anti-parallel
Strand 3	A	198	204	anti-parallel
Strand 4	A	118	123	anti-parallel
Strand 5	A	152	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	176	177	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	C	252	253	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	17	20	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	172	176	parallel
Strand 3	B	112	123	anti-parallel
Strand 4	B	228	242	anti-parallel
Strand 5	B	58	66	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	172	176	parallel
Strand 3	B	112	123	anti-parallel
Strand 4	B	185	186	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	81	first strand
Strand 2	B	207	218	anti-parallel
Strand 3	B	130	139	anti-parallel
Strand 4	B	161	165	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	232	238	anti-parallel
Strand 3	C	129	135	anti-parallel
Strand 4	C	179	184	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	210	221	anti-parallel
Strand 3	C	142	151	anti-parallel
Strand 4	C	168	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	109	110	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	124	126	anti-parallel
Strand 3	C	243	244	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	292	294	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	329	first strand
Strand 2	C	344	356	anti-parallel
Strand 3	C	359	366	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	329	first strand
Strand 2	C	344	356	anti-parallel
Strand 3	C	318	320	anti-parallel
Strand 4	C	411	412	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J96

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J96