Analysis of interatomic Contacts of Structural Units in PDB entry:
5J98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J98 entry

There are 3 chains in PDB entry 5J98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 252
B	MET 1	PRO 260
C	ASP 1	ARG 417

There are 25 helices in PDB entry 5J98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	5	Right-handed 310
Helix 2	AA2	A	32	37	Right-handed alpha
Helix 3	AA3	A	49	53	Right-handed 310
Helix 4	AA4	A	80	86	Right-handed alpha
Helix 5	AA5	A	89	96	Right-handed alpha
Helix 6	AA6	A	137	139	Right-handed 310
Helix 7	AA7	A	140	145	Right-handed alpha
Helix 8	AA8	A	187	194	Right-handed alpha
Helix 9	AA9	A	242	244	Right-handed 310
Helix 10	AB1	B	37	42	Right-handed 310
Helix 11	AB2	B	50	55	Right-handed alpha
Helix 12	AB3	B	68	70	Right-handed 310
Helix 13	AB4	B	83	87	Right-handed alpha
Helix 14	AB5	B	104	109	Right-handed alpha
Helix 15	AB6	B	141	144	Right-handed 310
Helix 16	AB7	B	146	151	Right-handed 310
Helix 17	AB8	B	152	157	Right-handed alpha
Helix 18	AB9	C	54	60	Right-handed alpha
Helix 19	AC1	C	94	98	Right-handed 310
Helix 20	AC2	C	113	120	Right-handed alpha
Helix 21	AC3	C	160	165	Right-handed alpha
Helix 22	AC4	C	199	203	Right-handed 310
Helix 23	AC5	C	368	384	Right-handed alpha
Helix 24	AC6	C	387	392	Right-handed alpha
Helix 25	AC7	C	393	395	Right-handed 310

There are 16 sheets in PDB entry 5J98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	C	179	184	parallel
Strand 3	C	129	135	anti-parallel
Strand 4	C	229	238	anti-parallel
Strand 5	C	63	64	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	C	179	184	parallel
Strand 3	C	129	135	anti-parallel
Strand 4	C	229	238	anti-parallel
Strand 5	C	68	71	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	48	first strand
Strand 2	A	215	223	anti-parallel
Strand 3	A	105	112	anti-parallel
Strand 4	A	162	167	anti-parallel
Strand 5	C	31	32	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	199	205	anti-parallel
Strand 4	A	117	123	anti-parallel
Strand 5	A	152	156	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	176	177	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	C	252	253	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	17	21	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	172	176	parallel
Strand 3	B	117	123	anti-parallel
Strand 4	B	228	237	anti-parallel
Strand 5	B	58	66	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	82	first strand
Strand 2	B	205	218	anti-parallel
Strand 3	B	130	139	anti-parallel
Strand 4	B	161	165	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	241	245	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	210	221	anti-parallel
Strand 3	C	142	151	anti-parallel
Strand 4	C	168	173	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	109	110	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	124	126	anti-parallel
Strand 3	C	243	244	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	292	294	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	331	first strand
Strand 2	C	341	356	anti-parallel
Strand 3	C	359	366	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	331	first strand
Strand 2	C	341	356	anti-parallel
Strand 3	C	317	320	anti-parallel
Strand 4	C	411	414	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J98

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J98