Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J9A entry

There is 1 chain in PDB entry 5J9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ALA 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5J9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 20Right-handed alpha
Helix 2
AA2
A
25 31Right-handed alpha
Helix 3
AA3
A
32 40Right-handed alpha
Helix 4
AA4
A
49 60Right-handed alpha
Helix 5
AA5
A
73 78Right-handed alpha
Helix 6
AA6
A
78 90Right-handed alpha
Helix 7
AA7
A
106 110Right-handed 310
Helix 8
AA8
A
136 140Right-handed 310
Helix 9
AA9
A
141 157Right-handed alpha
Helix 10
AB1
A
158 159Right-handed 310
Helix 11
AB2
A
160 164Right-handed 310
Helix 12
AB3
A
174 184Right-handed alpha
Helix 13
AB4
A
192 198Right-handed alpha
Helix 14
AB5
A
238 255Right-handed alpha
Helix 15
AB6
A
271 275Right-handed 310
Helix 16
AB7
A
293 304Right-handed alpha
Helix 17
AB8
A
334 356Right-handed alpha
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There are 2 sheets in PDB entry 5J9A. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
209 212anti-parallel
Strand 3
A
218 222anti-parallel
Strand 4
A
228 235anti-parallel
Strand 5
A
120 129anti-parallel
Strand 6
A
280 285anti-parallel
Strand 7
A
323 327anti-parallel
Strand 8
A
306 309anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
266 267anti-parallel
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