Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J9C entry

There are 2 chains in PDB entry 5J9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3HIS 169
B
 GLY 1HIS 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5J9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
39 43Right-handed alpha
Helix 3
AA3
A
58 64Right-handed alpha
Helix 4
AA4
A
64 79Right-handed alpha
Helix 5
AA5
A
91 102Right-handed alpha
Helix 6
AA6
A
117 123Right-handed alpha
Helix 7
AA7
A
160 166Right-handed alpha
Helix 8
AA8
B
22 26Right-handed 310
Helix 9
AA9
B
39 43Right-handed alpha
Helix 10
AB1
B
58 64Right-handed alpha
Helix 11
AB2
B
64 79Right-handed alpha
Helix 12
AB3
B
91 102Right-handed alpha
Helix 13
AB4
B
117 123Right-handed alpha
Helix 14
AB5
B
160 169Right-handed alpha
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There are 4 sheets in PDB entry 5J9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
35 38anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
83 88parallel
Strand 3
A
47 52parallel
Strand 4
A
135 140anti-parallel
Strand 5
A
143 149anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
35 38anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
83 88parallel
Strand 3
B
47 52parallel
Strand 4
B
135 140anti-parallel
Strand 5
B
143 149anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il