Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J9G entry

There are 2 chains in PDB entry 5J9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 338
B
 MET 1LEU 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5J9G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 27Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
83 87Right-handed 310
Helix 4
AA4
A
88 94Right-handed alpha
Helix 5
AA5
A
107 117Right-handed alpha
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
A
155 172Right-handed alpha
Helix 8
AA8
A
206 210Right-handed 310
Helix 9
AA9
A
221 225Right-handed 310
Helix 10
AB1
A
226 230Right-handed 310
Helix 11
AB2
A
259 270Right-handed alpha
Helix 12
AB3
A
283 288Right-handed 310
Helix 13
AB4
A
298 301Right-handed 310
Helix 14
AB5
A
321 336Right-handed alpha
Helix 15
AB6
B
11 27Right-handed alpha
Helix 16
AB7
B
41 51Right-handed alpha
Helix 17
AB8
B
83 87Right-handed 310
Helix 18
AB9
B
88 94Right-handed alpha
Helix 19
AC1
B
107 117Right-handed alpha
Helix 20
AC2
B
140 144Right-handed 310
Helix 21
AC3
B
155 172Right-handed alpha
Helix 22
AC4
B
206 210Right-handed 310
Helix 23
AC5
B
221 225Right-handed 310
Helix 24
AC6
B
226 230Right-handed 310
Helix 25
AC7
B
259 270Right-handed alpha
Helix 26
AC8
B
283 288Right-handed 310
Helix 27
AC9
B
298 301Right-handed 310
Helix 28
AD1
B
321 336Right-handed alpha
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There are 6 sheets in PDB entry 5J9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
68 71anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
31 37parallel
Strand 5
A
3 8parallel
Strand 6
A
97 100parallel
Strand 7
A
121 124parallel
Strand 8
A
150 152parallel
Strand 9
A
133 134parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
233 240anti-parallel
Strand 3
A
174 184parallel
Strand 4
A
246 254anti-parallel
Strand 5
A
309 318anti-parallel
Strand 6
A
294 296anti-parallel
Strand 7
A
275 277parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
233 240anti-parallel
Strand 3
A
174 184parallel
Strand 4
A
246 254anti-parallel
Strand 5
A
309 318anti-parallel
Strand 6
A
302 306anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
68 71anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
31 37parallel
Strand 5
B
3 8parallel
Strand 6
B
97 100parallel
Strand 7
B
121 124parallel
Strand 8
B
150 152parallel
Strand 9
B
133 134parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
233 240anti-parallel
Strand 3
B
174 184parallel
Strand 4
B
246 254anti-parallel
Strand 5
B
309 318anti-parallel
Strand 6
B
294 296anti-parallel
Strand 7
B
275 277parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
233 240anti-parallel
Strand 3
B
174 184parallel
Strand 4
B
246 254anti-parallel
Strand 5
B
309 318anti-parallel
Strand 6
B
302 306anti-parallel
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