Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J9K entry

There are 4 chains in PDB entry 5J9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 205
B
 MET 1THR 205
C
 ASN 795LEU 803
D
 ASN 795ASN 802
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5J9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 19Right-handed alpha
Helix 2
AA2
A
21 33Right-handed alpha
Helix 3
AA3
A
37 47Right-handed alpha
Helix 4
AA4
A
49 58Right-handed alpha
Helix 5
AA5
A
66 87Right-handed alpha
Helix 6
AA6
A
89 100Right-handed alpha
Helix 7
AA7
A
101 105Right-handed 310
Helix 8
AA8
A
108 117Right-handed alpha
Helix 9
AA9
A
118 121Right-handed 310
Helix 10
AB1
A
123 127Right-handed 310
Helix 11
AB2
A
135 154Right-handed alpha
Helix 12
AB3
A
169 185Right-handed alpha
Helix 13
AB4
B
2 19Right-handed alpha
Helix 14
AB5
B
21 33Right-handed alpha
Helix 15
AB6
B
37 47Right-handed alpha
Helix 16
AB7
B
49 58Right-handed alpha
Helix 17
AB8
B
66 87Right-handed alpha
Helix 18
AB9
B
89 100Right-handed alpha
Helix 19
AC1
B
101 105Right-handed 310
Helix 20
AC2
B
108 117Right-handed alpha
Helix 21
AC3
B
123 127Right-handed 310
Helix 22
AC4
B
135 154Right-handed alpha
Helix 23
AC5
B
155 161Right-handed 310
Helix 24
AC6
B
169 184Right-handed alpha
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There are no sheets in PDB entry 5J9K
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il