Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J9Q entry

There are 8 chains in PDB entry 5J9Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 153	HIS 261
E	THR 263	TRP 445
F	MET 1	TYR 102
G	ILE 60	PRO 399
A	MET 154	HIS 261
A	THR 263	TRP 445
I	MET 154	HIS 261
I	THR 263	LEU 385

There are 80 helices in PDB entry 5J9Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	188	192	Right-handed 310
Helix 2	AA2	E	207	218	Right-handed alpha
Helix 3	AA3	E	244	257	Right-handed alpha
Helix 4	AA4	E	309	312	Right-handed 310
Helix 5	AA5	E	315	332	Right-handed alpha
Helix 6	AA6	E	342	365	Right-handed alpha
Helix 7	AA7	E	369	378	Right-handed alpha
Helix 8	AA8	E	380	391	Right-handed alpha
Helix 9	AA9	E	406	419	Right-handed alpha
Helix 10	AB1	E	425	429	Right-handed 310
Helix 11	AB2	F	2	44	Right-handed alpha
Helix 12	AB3	F	89	93	Right-handed 310
Helix 13	AB4	F	95	99	Right-handed 310
Helix 14	AB5	G	132	137	Right-handed alpha
Helix 15	AB6	G	153	158	Right-handed alpha
Helix 16	AB7	G	165	175	Right-handed alpha
Helix 17	AB8	G	185	204	Right-handed alpha
Helix 18	AB9	G	206	214	Right-handed 310
Helix 19	AC1	G	216	227	Right-handed alpha
Helix 20	AC2	G	232	242	Right-handed alpha
Helix 21	AC3	G	255	259	Right-handed 310
Helix 22	AC4	G	263	286	Right-handed alpha
Helix 23	AC5	G	327	383	Right-handed alpha
Helix 24	AC6	A	207	216	Right-handed alpha
Helix 25	AC7	A	244	257	Right-handed alpha
Helix 26	AC8	A	309	312	Right-handed 310
Helix 27	AC9	A	315	332	Right-handed alpha
Helix 28	AD1	A	342	365	Right-handed alpha
Helix 29	AD2	A	369	378	Right-handed alpha
Helix 30	AD3	A	380	391	Right-handed alpha
Helix 31	AD4	A	406	419	Right-handed alpha
Helix 32	AD5	A	425	429	Right-handed 310
Helix 33	AD6	I	188	192	Right-handed 310
Helix 34	AD7	I	207	218	Right-handed alpha
Helix 35	AD8	I	244	257	Right-handed alpha
Helix 36	AD9	I	309	312	Right-handed 310
Helix 37	AE1	I	315	332	Right-handed alpha
Helix 38	AE2	I	342	365	Right-handed alpha
Helix 39	AE3	I	369	378	Right-handed alpha
Helix 40	AE4	I	380	391	Right-handed alpha
Helix 41	AE5	I	406	419	Right-handed alpha
Helix 42	AE6	I	425	429	Right-handed 310
Helix 43	AE7	N	132	137	Right-handed alpha
Helix 44	AE8	N	153	158	Right-handed 310
Helix 45	AE9	N	165	175	Right-handed alpha
Helix 46	AF1	N	185	204	Right-handed alpha
Helix 47	AF2	N	206	214	Right-handed 310
Helix 48	AF3	N	216	227	Right-handed alpha
Helix 49	AF4	N	232	242	Right-handed alpha
Helix 50	AF5	N	255	259	Right-handed 310
Helix 51	AF6	N	263	286	Right-handed alpha
Helix 52	AF7	N	327	382	Right-handed alpha
Helix 53	AF8	N	388	392	Right-handed 310
Helix 54	AF9	C	132	137	Right-handed alpha
Helix 55	AG1	C	153	158	Right-handed 310
Helix 56	AG2	C	165	175	Right-handed alpha
Helix 57	AG3	C	185	204	Right-handed alpha
Helix 58	AG4	C	206	214	Right-handed 310
Helix 59	AG5	C	216	227	Right-handed alpha
Helix 60	AG6	C	232	242	Right-handed alpha
Helix 61	AG7	C	255	259	Right-handed 310
Helix 62	AG8	C	263	286	Right-handed alpha
Helix 63	AG9	C	327	383	Right-handed alpha
Helix 64	AH1	C	388	392	Right-handed 310
Helix 65	AH2	D	2	15	Right-handed alpha
Helix 66	AH3	D	16	57	Right-handed alpha
Helix 67	AH4	D	64	114	Right-handed alpha
Helix 68	AH5	B	2	44	Right-handed alpha
Helix 69	AH6	B	89	93	Right-handed 310
Helix 70	AH7	B	95	98	Right-handed 310
Helix 71	AH8	B	99	104	Right-handed alpha
Helix 72	AH9	J	2	44	Right-handed alpha
Helix 73	AI1	J	89	93	Right-handed 310
Helix 74	AI2	J	95	99	Right-handed 310
Helix 75	AI3	H	2	15	Right-handed alpha
Helix 76	AI4	H	16	56	Right-handed alpha
Helix 77	AI5	H	64	114	Right-handed alpha
Helix 78	AI6	K	2	15	Right-handed alpha
Helix 79	AI7	K	16	57	Right-handed alpha
Helix 80	AI8	K	64	114	Right-handed alpha

There are 17 sheets in PDB entry 5J9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	205	first strand
Strand 2	E	195	197	anti-parallel
Strand 3	E	170	172	parallel
Strand 4	E	175	177	anti-parallel
Strand 5	G	128	129	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	230	first strand
Strand 2	E	235	240	anti-parallel
Strand 3	E	271	279	anti-parallel
Strand 4	E	284	293	anti-parallel
Strand 5	E	305	307	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	302	first strand
Strand 2	E	336	337	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	394	396	first strand
Strand 2	E	401	403	anti-parallel
Strand 3	N	66	67	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	67	first strand
Strand 2	A	401	404	anti-parallel
Strand 3	A	394	396	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	74	first strand
Strand 2	G	122	123	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	195	197	anti-parallel
Strand 3	A	170	172	parallel
Strand 4	A	175	177	anti-parallel
Strand 5	C	128	129	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	230	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	271	279	anti-parallel
Strand 4	A	284	293	anti-parallel
Strand 5	A	305	307	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	336	337	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	204	205	first strand
Strand 2	I	195	197	anti-parallel
Strand 3	I	170	172	parallel
Strand 4	I	175	177	anti-parallel
Strand 5	N	128	129	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	226	230	first strand
Strand 2	I	235	240	anti-parallel
Strand 3	I	271	279	anti-parallel
Strand 4	I	284	293	anti-parallel
Strand 5	I	305	307	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	300	302	first strand
Strand 2	I	336	337	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	394	396	first strand
Strand 2	I	401	404	anti-parallel
Strand 3	C	65	66	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	73	75	first strand
Strand 2	N	121	123	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	296	297	first strand
Strand 2	N	310	311	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	121	123	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	310	311	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J9Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9Q