Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J9R entry

There are 4 chains in PDB entry 5J9R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	LEU 326
B	CYS 1	LEU 326
D	CYS 1	LEU 326
C	CYS 1	LEU 326

There are 41 helices in PDB entry 5J9R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	46	Right-handed 310
Helix 2	AA2	A	100	109	Right-handed alpha
Helix 3	AA3	A	111	121	Right-handed alpha
Helix 4	AA4	A	177	187	Right-handed alpha
Helix 5	AA5	A	188	191	Right-handed 310
Helix 6	AA6	A	202	217	Right-handed alpha
Helix 7	AA7	A	222	237	Right-handed alpha
Helix 8	AA8	A	283	285	Right-handed 310
Helix 9	AA9	A	300	304	Right-handed 310
Helix 10	AB1	A	312	315	Right-handed 310
Helix 11	AB2	B	42	46	Right-handed 310
Helix 12	AB3	B	97	99	Right-handed 310
Helix 13	AB4	B	100	109	Right-handed alpha
Helix 14	AB5	B	111	120	Right-handed alpha
Helix 15	AB6	B	177	187	Right-handed alpha
Helix 16	AB7	B	188	191	Right-handed 310
Helix 17	AB8	B	202	217	Right-handed alpha
Helix 18	AB9	B	222	237	Right-handed alpha
Helix 19	AC1	B	283	285	Right-handed 310
Helix 20	AC2	B	300	304	Right-handed 310
Helix 21	AC3	B	312	315	Right-handed 310
Helix 22	AC4	D	42	46	Right-handed 310
Helix 23	AC5	D	100	109	Right-handed alpha
Helix 24	AC6	D	111	121	Right-handed alpha
Helix 25	AC7	D	177	187	Right-handed alpha
Helix 26	AC8	D	188	191	Right-handed 310
Helix 27	AC9	D	202	217	Right-handed alpha
Helix 28	AD1	D	222	237	Right-handed alpha
Helix 29	AD2	D	283	285	Right-handed 310
Helix 30	AD3	D	300	304	Right-handed 310
Helix 31	AD4	D	312	315	Right-handed 310
Helix 32	AD5	C	42	46	Right-handed 310
Helix 33	AD6	C	100	109	Right-handed alpha
Helix 34	AD7	C	111	121	Right-handed alpha
Helix 35	AD8	C	177	187	Right-handed alpha
Helix 36	AD9	C	188	191	Right-handed 310
Helix 37	AE1	C	202	217	Right-handed alpha
Helix 38	AE2	C	222	237	Right-handed alpha
Helix 39	AE3	C	283	285	Right-handed 310
Helix 40	AE4	C	300	304	Right-handed 310
Helix 41	AE5	C	312	315	Right-handed 310

There are 15 sheets in PDB entry 5J9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	2	7	anti-parallel
Strand 3	A	13	20	anti-parallel
Strand 4	A	254	261	anti-parallel
Strand 5	A	266	271	anti-parallel
Strand 6	A	277	281	anti-parallel
Strand 7	A	308	310	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	165	first strand
Strand 2	A	151	157	anti-parallel
Strand 3	A	140	145	anti-parallel
Strand 4	A	75	80	anti-parallel
Strand 5	A	65	70	anti-parallel
Strand 6	A	55	59	anti-parallel
Strand 7	A	29	32	anti-parallel
Strand 8	A	295	297	anti-parallel
Strand 9	A	316	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	125	127	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	13	20	anti-parallel
Strand 4	B	254	261	anti-parallel
Strand 5	B	266	271	anti-parallel
Strand 6	B	277	281	anti-parallel
Strand 7	B	308	310	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	165	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	140	145	anti-parallel
Strand 4	B	75	80	anti-parallel
Strand 5	B	65	70	anti-parallel
Strand 6	B	55	59	anti-parallel
Strand 7	B	29	32	anti-parallel
Strand 8	B	295	297	anti-parallel
Strand 9	B	316	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	173	first strand
Strand 2	D	2	7	anti-parallel
Strand 3	D	13	20	anti-parallel
Strand 4	D	254	261	anti-parallel
Strand 5	D	266	271	anti-parallel
Strand 6	D	277	281	anti-parallel
Strand 7	D	308	310	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	165	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	140	145	anti-parallel
Strand 4	D	75	80	anti-parallel
Strand 5	D	65	70	anti-parallel
Strand 6	D	55	59	anti-parallel
Strand 7	D	29	32	anti-parallel
Strand 8	D	295	297	anti-parallel
Strand 9	D	316	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	125	127	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	2	7	anti-parallel
Strand 3	C	13	20	anti-parallel
Strand 4	C	254	261	anti-parallel
Strand 5	C	266	271	anti-parallel
Strand 6	C	277	281	anti-parallel
Strand 7	C	308	310	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	165	first strand
Strand 2	C	151	157	anti-parallel
Strand 3	C	140	145	anti-parallel
Strand 4	C	75	80	anti-parallel
Strand 5	C	65	70	anti-parallel
Strand 6	C	55	59	anti-parallel
Strand 7	C	29	32	anti-parallel
Strand 8	C	295	297	anti-parallel
Strand 9	C	316	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	125	127	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J9R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9R