Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J9T entry

There are 9 chains in PDB entry 5J9T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLU 160	HIS 261
E	THR 263	THR 437
F	SER 7	HIS 107
G	SER 127	PRO 399
H	MET 1	PRO 119
A	GLU 160	HIS 261
A	THR 263	THR 437
B	MET 1	GLN 109
C	MET 128	ASP 228

There are 84 helices in PDB entry 5J9T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	160	164	Right-handed 310
Helix 2	AA2	E	186	192	Right-handed 310
Helix 3	AA3	E	207	218	Right-handed alpha
Helix 4	AA4	E	244	257	Right-handed alpha
Helix 5	AA5	E	309	312	Right-handed 310
Helix 6	AA6	E	315	331	Right-handed alpha
Helix 7	AA7	E	342	365	Right-handed alpha
Helix 8	AA8	E	369	378	Right-handed alpha
Helix 9	AA9	E	380	391	Right-handed alpha
Helix 10	AB1	E	406	419	Right-handed alpha
Helix 11	AB2	E	425	429	Right-handed 310
Helix 12	AB3	F	8	44	Right-handed alpha
Helix 13	AB4	F	89	93	Right-handed 310
Helix 14	AB5	F	95	98	Right-handed 310
Helix 15	AB6	F	99	107	Right-handed alpha
Helix 16	AB7	G	132	137	Right-handed alpha
Helix 17	AB8	G	154	158	Right-handed 310
Helix 18	AB9	G	165	175	Right-handed alpha
Helix 19	AC1	G	185	204	Right-handed alpha
Helix 20	AC2	G	206	214	Right-handed 310
Helix 21	AC3	G	216	227	Right-handed alpha
Helix 22	AC4	G	228	230	Right-handed 310
Helix 23	AC5	G	231	242	Right-handed alpha
Helix 24	AC6	G	255	261	Right-handed 310
Helix 25	AC7	G	263	286	Right-handed alpha
Helix 26	AC8	G	323	383	Right-handed alpha
Helix 27	AC9	H	2	14	Right-handed alpha
Helix 28	AD1	H	16	57	Right-handed alpha
Helix 29	AD2	H	64	114	Right-handed alpha
Helix 30	AD3	A	160	164	Right-handed 310
Helix 31	AD4	A	186	192	Right-handed 310
Helix 32	AD5	A	207	218	Right-handed alpha
Helix 33	AD6	A	244	257	Right-handed alpha
Helix 34	AD7	A	309	312	Right-handed 310
Helix 35	AD8	A	315	331	Right-handed alpha
Helix 36	AD9	A	342	365	Right-handed alpha
Helix 37	AE1	A	369	378	Right-handed alpha
Helix 38	AE2	A	380	391	Right-handed alpha
Helix 39	AE3	A	406	420	Right-handed alpha
Helix 40	AE4	A	425	429	Right-handed 310
Helix 41	AE5	B	2	44	Right-handed alpha
Helix 42	AE6	B	95	98	Right-handed 310
Helix 43	AE7	B	99	108	Right-handed alpha
Helix 44	AE8	C	132	137	Right-handed alpha
Helix 45	AE9	C	154	158	Right-handed 310
Helix 46	AF1	C	165	175	Right-handed alpha
Helix 47	AF2	C	185	204	Right-handed alpha
Helix 48	AF3	C	206	214	Right-handed 310
Helix 49	AF4	C	216	227	Right-handed alpha
Helix 50	AF5	C	228	230	Right-handed 310
Helix 51	AF6	C	231	242	Right-handed alpha
Helix 52	AF7	C	255	261	Right-handed 310
Helix 53	AF8	C	263	286	Right-handed alpha
Helix 54	AF9	C	323	383	Right-handed alpha
Helix 55	AG1	C	388	392	Right-handed 310
Helix 56	AG2	D	2	14	Right-handed alpha
Helix 57	AG3	D	16	57	Right-handed alpha
Helix 58	AG4	D	64	115	Right-handed alpha
Helix 59	AG5	I	186	192	Right-handed 310
Helix 60	AG6	I	207	218	Right-handed alpha
Helix 61	AG7	I	244	257	Right-handed alpha
Helix 62	AG8	I	309	312	Right-handed 310
Helix 63	AG9	I	315	331	Right-handed alpha
Helix 64	AH1	I	342	365	Right-handed alpha
Helix 65	AH2	I	370	378	Right-handed alpha
Helix 66	AH3	I	380	391	Right-handed alpha
Helix 67	AH4	I	406	420	Right-handed alpha
Helix 68	AH5	I	425	429	Right-handed 310
Helix 69	AH6	J	2	45	Right-handed alpha
Helix 70	AH7	J	93	98	Right-handed alpha
Helix 71	AH8	J	99	104	Right-handed alpha
Helix 72	AH9	K	132	137	Right-handed alpha
Helix 73	AI1	K	153	158	Right-handed alpha
Helix 74	AI2	K	165	175	Right-handed alpha
Helix 75	AI3	K	185	204	Right-handed alpha
Helix 76	AI4	K	206	214	Right-handed 310
Helix 77	AI5	K	216	226	Right-handed alpha
Helix 78	AI6	K	231	244	Right-handed alpha
Helix 79	AI7	K	255	261	Right-handed 310
Helix 80	AI8	K	263	286	Right-handed alpha
Helix 81	AI9	K	323	383	Right-handed alpha
Helix 82	AJ1	L	2	15	Right-handed alpha
Helix 83	AJ2	L	16	57	Right-handed alpha
Helix 84	AJ3	L	64	113	Right-handed alpha

There are 12 sheets in PDB entry 5J9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	169	172	anti-parallel
Strand 3	E	194	197	parallel
Strand 4	E	204	205	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	230	first strand
Strand 2	E	235	240	anti-parallel
Strand 3	E	271	279	anti-parallel
Strand 4	E	284	293	anti-parallel
Strand 5	E	305	307	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	302	first strand
Strand 2	E	336	337	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	394	397	first strand
Strand 2	E	400	403	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	194	197	parallel
Strand 4	A	204	205	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	230	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	271	279	anti-parallel
Strand 4	A	284	293	anti-parallel
Strand 5	A	305	307	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	336	337	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	400	403	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	175	177	first strand
Strand 2	I	169	172	anti-parallel
Strand 3	I	194	197	parallel
Strand 4	I	204	205	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	226	230	first strand
Strand 2	I	235	240	anti-parallel
Strand 3	I	271	279	anti-parallel
Strand 4	I	284	293	anti-parallel
Strand 5	I	305	307	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	300	302	first strand
Strand 2	I	336	337	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	368	369	first strand
Strand 2	I	400	403	anti-parallel
Strand 3	I	394	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J9T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J9T