Analysis of interatomic Contacts of Structural Units in PDB entry:
5JA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JA0 entry

There is 1 chain in PDB entry 5JA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 TYR 10LYS 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5JA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
10 29Right-handed alpha
Helix 2
AA2
F
38 53Right-handed alpha
Helix 3
AA3
F
58 72Right-handed alpha
Helix 4
AA4
F
78 107Right-handed alpha
Helix 5
AA5
F
118 121Right-handed 310
Helix 6
AA6
F
124 126Right-handed 310
Helix 7
AA7
F
127 148Right-handed alpha
Helix 8
AA8
F
152 178Right-handed alpha
Helix 9
AA9
F
184 188Right-handed 310
Helix 10
AB1
F
189 201Right-handed alpha
Helix 11
AB2
F
201 206Right-handed alpha
Helix 12
AB3
F
206 217Right-handed alpha
Helix 13
AB4
F
221 250Right-handed alpha
Helix 14
AB5
F
261 265Right-handed 310
Helix 15
AB6
F
268 278Right-handed alpha
Helix 16
AB7
F
279 290Right-handed alpha
Helix 17
AB8
F
294 308Right-handed alpha
Helix 18
AB9
F
309 333Right-handed alpha
Helix 19
AC1
F
337 349Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JA0.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 112first strand
Strand 2
F
115 116anti-parallel
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