Analysis of interatomic Contacts of Structural Units in PDB entry:
5JA2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JA2 entry

There are 2 chains in PDB entry 5JA2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 18	ASN 1292
B	HIS 0	MET 67

There are 49 helices in PDB entry 5JA2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	55	Right-handed alpha
Helix 2	AA2	A	92	106	Right-handed alpha
Helix 3	AA3	A	145	162	Right-handed alpha
Helix 4	AA4	A	173	187	Right-handed alpha
Helix 5	AA5	A	187	203	Right-handed alpha
Helix 6	AA6	A	234	243	Right-handed alpha
Helix 7	AA7	A	247	264	Right-handed alpha
Helix 8	AA8	A	280	285	Right-handed alpha
Helix 9	AA9	A	305	322	Right-handed alpha
Helix 10	AB1	A	327	335	Right-handed alpha
Helix 11	AB2	A	402	423	Right-handed alpha
Helix 12	AB3	A	435	446	Right-handed alpha
Helix 13	AB4	A	456	468	Right-handed alpha
Helix 14	AB5	A	483	500	Right-handed alpha
Helix 15	AB6	A	515	528	Right-handed alpha
Helix 16	AB7	A	540	552	Right-handed alpha
Helix 17	AB8	A	562	567	Right-handed alpha
Helix 18	AB9	A	617	631	Right-handed alpha
Helix 19	AC1	A	647	649	Right-handed 310
Helix 20	AC2	A	650	655	Right-handed alpha
Helix 21	AC3	A	656	659	Right-handed 310
Helix 22	AC4	A	674	686	Right-handed alpha
Helix 23	AC5	A	693	703	Right-handed alpha
Helix 24	AC6	A	705	713	Right-handed alpha
Helix 25	AC7	A	714	716	Right-handed 310
Helix 26	AC8	A	728	738	Right-handed alpha
Helix 27	AC9	A	748	752	Right-handed 310
Helix 28	AD1	A	761	767	Right-handed alpha
Helix 29	AD2	A	816	823	Right-handed alpha
Helix 30	AD3	A	869	877	Right-handed alpha
Helix 31	AD4	A	893	897	Right-handed 310
Helix 32	AD5	A	918	927	Right-handed alpha
Helix 33	AD6	A	931	935	Right-handed 310
Helix 34	AD7	A	976	989	Right-handed alpha
Helix 35	AD8	A	1005	1020	Right-handed alpha
Helix 36	AD9	A	1025	1032	Right-handed alpha
Helix 37	AE1	A	1034	1043	Right-handed alpha
Helix 38	AE2	A	1078	1085	Right-handed 310
Helix 39	AE3	A	1104	1109	Right-handed alpha
Helix 40	AE4	A	1118	1124	Right-handed alpha
Helix 41	AE5	A	1138	1153	Right-handed alpha
Helix 42	AE6	A	1183	1200	Right-handed alpha
Helix 43	AE7	A	1211	1225	Right-handed alpha
Helix 44	AE8	A	1250	1255	Right-handed alpha
Helix 45	AE9	A	1272	1275	Right-handed 310
Helix 46	AF1	A	1276	1292	Right-handed alpha
Helix 47	AF2	B	3	7	Right-handed 310
Helix 48	AF3	B	44	55	Right-handed alpha
Helix 49	AF4	B	60	64	Right-handed 310

There are 14 sheets in PDB entry 5JA2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	119	124	parallel
Strand 3	A	129	137	anti-parallel
Strand 4	A	28	37	anti-parallel
Strand 5	A	363	371	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	70	72	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	231	first strand
Strand 2	A	390	397	anti-parallel
Strand 3	A	378	384	anti-parallel
Strand 4	A	347	350	parallel
Strand 5	A	268	276	parallel
Strand 6	A	291	299	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	482	first strand
Strand 2	A	472	475	anti-parallel
Strand 3	A	663	666	parallel
Strand 4	A	638	641	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	534	first strand
Strand 2	A	507	511	parallel
Strand 3	A	555	558	parallel
Strand 4	A	574	576	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	603	first strand
Strand 2	A	611	616	anti-parallel
Strand 3	A	812	813	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	692	first strand
Strand 2	A	718	721	parallel
Strand 3	A	742	746	parallel
Strand 4	A	756	759	anti-parallel
Strand 5	A	777	778	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	727	first strand
Strand 2	A	772	773	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	787	first strand
Strand 2	A	800	806	anti-parallel
Strand 3	A	834	844	anti-parallel
Strand 4	A	824	826	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	787	first strand
Strand 2	A	800	806	anti-parallel
Strand 3	A	834	844	anti-parallel
Strand 4	A	850	855	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	862	first strand
Strand 2	A	865	868	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	884	890	first strand
Strand 2	A	904	910	anti-parallel
Strand 3	A	938	941	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1057	1061	first strand
Strand 2	A	1093	1097	anti-parallel
Strand 3	A	1067	1070	parallel
Strand 4	A	1132	1137	parallel
Strand 5	A	1158	1164	parallel
Strand 6	A	1236	1241	parallel
Strand 7	A	1262	1267	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	26	first strand
Strand 2	B	11	16	anti-parallel
Strand 3	B	36	43	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JA2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JA2