Analysis of interatomic Contacts of Structural Units in PDB entry:
5JAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JAE entry

There are 2 chains in PDB entry 5JAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 512
B
 LYS 4HIS 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5JAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
29 39Right-handed alpha
Helix 3
AA3
A
39 54Right-handed alpha
Helix 4
AA4
A
54 72Right-handed alpha
Helix 5
AA5
A
76 85Right-handed alpha
Helix 6
AA6
A
87 125Right-handed alpha
Helix 7
AA7
A
136 153Right-handed alpha
Helix 8
AA8
A
165 186Right-handed alpha
Helix 9
AA9
A
190 215Right-handed alpha
Helix 10
AB1
A
223 229Right-handed alpha
Helix 11
AB2
A
236 239Right-handed 310
Helix 12
AB3
A
240 256Right-handed alpha
Helix 13
AB4
A
260 268Right-handed alpha
Helix 14
AB5
A
275 292Right-handed alpha
Helix 15
AB6
A
293 296Right-handed 310
Helix 16
AB7
A
297 316Right-handed alpha
Helix 17
AB8
A
318 325Right-handed alpha
Helix 18
AB9
A
325 332Right-handed alpha
Helix 19
AC1
A
336 370Right-handed alpha
Helix 20
AC2
A
374 396Right-handed alpha
Helix 21
AC3
A
398 407Right-handed alpha
Helix 22
AC4
A
409 425Right-handed alpha
Helix 23
AC5
A
428 438Right-handed alpha
Helix 24
AC6
A
446 454Right-handed alpha
Helix 25
AC7
A
454 472Right-handed alpha
Helix 26
AC8
A
482 511Right-handed alpha
Helix 27
AC9
B
10 24Right-handed alpha
Helix 28
AD1
B
29 37Right-handed alpha
Helix 29
AD2
B
39 42Right-handed 310
Helix 30
AD3
B
43 54Right-handed alpha
Helix 31
AD4
B
54 72Right-handed alpha
Helix 32
AD5
B
76 85Right-handed alpha
Helix 33
AD6
B
87 125Right-handed alpha
Helix 34
AD7
B
136 153Right-handed alpha
Helix 35
AD8
B
165 190Right-handed alpha
Helix 36
AD9
B
190 216Right-handed alpha
Helix 37
AE1
B
223 232Right-handed alpha
Helix 38
AE2
B
234 239Right-handed alpha
Helix 39
AE3
B
240 255Right-handed alpha
Helix 40
AE4
B
260 268Right-handed alpha
Helix 41
AE5
B
275 292Right-handed alpha
Helix 42
AE6
B
297 316Right-handed alpha
Helix 43
AE7
B
318 324Right-handed alpha
Helix 44
AE8
B
325 333Right-handed alpha
Helix 45
AE9
B
336 370Right-handed alpha
Helix 46
AF1
B
374 396Right-handed alpha
Helix 47
AF2
B
398 407Right-handed alpha
Helix 48
AF3
B
409 424Right-handed alpha
Helix 49
AF4
B
428 438Right-handed alpha
Helix 50
AF5
B
446 454Right-handed alpha
Helix 51
AF6
B
454 471Right-handed alpha
Helix 52
AF7
B
481 510Right-handed alpha
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There are 2 sheets in PDB entry 5JAE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
221 222anti-parallel
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