Analysis of interatomic Contacts of Structural Units in PDB entry:
5JAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JAM entry

There is 1 chain in PDB entry 5JAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -5GLY 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5JAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-5 -1Right-handed 310
Helix 2
AA2
A
16 35Right-handed alpha
Helix 3
AA3
A
51 64Right-handed alpha
Helix 4
AA4
A
85 101Right-handed alpha
Helix 5
AA5
A
114 129Right-handed alpha
Helix 6
AA6
A
185 197Right-handed alpha
Helix 7
AA7
A
198 210Right-handed alpha
Helix 8
AA8
A
228 236Right-handed alpha
Helix 9
AA9
A
238 260Right-handed alpha
Helix 10
AB1
A
278 282Right-handed 310
Helix 11
AB2
A
283 299Right-handed alpha
Helix 12
AB3
A
304 316Right-handed alpha
Helix 13
AB4
A
338 350Right-handed alpha
Helix 14
AB5
A
356 361Right-handed alpha
Helix 15
AB6
A
362 374Right-handed alpha
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There are 4 sheets in PDB entry 5JAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
11 12anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
265 270parallel
Strand 3
A
214 224parallel
Strand 4
A
132 137parallel
Strand 5
A
43 47parallel
Strand 6
A
68 73parallel
Strand 7
A
105 109parallel
Strand 8
A
396 398parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
152 154anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 170first strand
Strand 2
A
175 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il