Analysis of interatomic Contacts of Structural Units in PDB entry:
5JAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JAY entry

There are 2 chains in PDB entry 5JAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2LEU 389
B
 LEU 3GLN 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5JAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
55 70Right-handed alpha
Helix 3
AA3
A
83 98Right-handed alpha
Helix 4
AA4
A
111 124Right-handed alpha
Helix 5
AA5
A
137 147Right-handed alpha
Helix 6
AA6
A
158 168Right-handed alpha
Helix 7
AA7
A
190 201Right-handed alpha
Helix 8
AA8
A
217 221Right-handed 310
Helix 9
AA9
A
222 227Right-handed alpha
Helix 10
AB1
A
255 265Right-handed alpha
Helix 11
AB2
A
266 271Right-handed 310
Helix 12
AB3
A
275 290Right-handed alpha
Helix 13
AB4
A
291 315Right-handed alpha
Helix 14
AB5
A
333 347Right-handed alpha
Helix 15
AB6
A
375 389Right-handed alpha
Helix 16
AB7
B
4 16Right-handed alpha
Helix 17
AB8
B
55 70Right-handed alpha
Helix 18
AB9
B
83 98Right-handed alpha
Helix 19
AC1
B
111 124Right-handed alpha
Helix 20
AC2
B
137 148Right-handed alpha
Helix 21
AC3
B
158 168Right-handed alpha
Helix 22
AC4
B
190 202Right-handed alpha
Helix 23
AC5
B
217 221Right-handed 310
Helix 24
AC6
B
222 228Right-handed alpha
Helix 25
AC7
B
255 265Right-handed alpha
Helix 26
AC8
B
275 291Right-handed alpha
Helix 27
AC9
B
291 314Right-handed alpha
Helix 28
AD1
B
333 347Right-handed alpha
Helix 29
AD2
B
375 387Right-handed alpha
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There are 6 sheets in PDB entry 5JAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
349 350parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
249 254anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
204 208parallel
Strand 5
A
173 179parallel
Strand 6
A
128 133parallel
Strand 7
A
150 154parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
326 332anti-parallel
Strand 3
A
364 369anti-parallel
Strand 4
A
353 354anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
39 43anti-parallel
Strand 3
B
349 350parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
249 254anti-parallel
Strand 3
B
234 239anti-parallel
Strand 4
B
203 208parallel
Strand 5
B
173 179parallel
Strand 6
B
128 133parallel
Strand 7
B
150 154parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
326 332anti-parallel
Strand 3
B
364 369anti-parallel
Strand 4
B
353 354anti-parallel
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