Analysis of interatomic Contacts of Structural Units in PDB entry:
5JB1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JB1 entry

There are 6 chains in PDB entry 5JB1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 18	LEU 473
B	LYS 10	LEU 473
C	SER 17	LEU 473
D	LYS 20	LEU 473
E	LYS 20	LEU 473
F	LYS 10	LEU 473

There are 69 helices in PDB entry 5JB1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	27	Right-handed 310
Helix 2	AA2	A	209	214	Right-handed alpha
Helix 3	AA3	A	221	226	Right-handed alpha
Helix 4	AA4	A	233	239	Right-handed alpha
Helix 5	AA5	A	280	285	Right-handed alpha
Helix 6	AA6	A	303	305	Right-handed 310
Helix 7	AA7	A	324	326	Right-handed 310
Helix 8	AA8	A	337	339	Right-handed 310
Helix 9	AA9	A	357	359	Right-handed 310
Helix 10	AB1	A	388	397	Right-handed alpha
Helix 11	AB2	A	397	402	Right-handed alpha
Helix 12	AB3	A	411	418	Right-handed alpha
Helix 13	AB4	A	440	445	Right-handed 310
Helix 14	AB5	A	463	473	Right-handed alpha
Helix 15	AB6	B	23	27	Right-handed 310
Helix 16	AB7	B	210	214	Right-handed alpha
Helix 17	AB8	B	221	226	Right-handed alpha
Helix 18	AB9	B	233	240	Right-handed alpha
Helix 19	AC1	B	324	326	Right-handed 310
Helix 20	AC2	B	357	359	Right-handed 310
Helix 21	AC3	B	385	403	Right-handed alpha
Helix 22	AC4	B	441	445	Right-handed 310
Helix 23	AC5	B	453	456	Right-handed 310
Helix 24	AC6	B	463	473	Right-handed alpha
Helix 25	AC7	C	23	27	Right-handed alpha
Helix 26	AC8	C	210	214	Right-handed alpha
Helix 27	AC9	C	233	240	Right-handed alpha
Helix 28	AD1	C	272	276	Right-handed 310
Helix 29	AD2	C	280	284	Right-handed 310
Helix 30	AD3	C	303	305	Right-handed 310
Helix 31	AD4	C	324	326	Right-handed 310
Helix 32	AD5	C	385	403	Right-handed alpha
Helix 33	AD6	C	459	462	Right-handed 310
Helix 34	AD7	C	463	473	Right-handed alpha
Helix 35	AD8	D	209	214	Right-handed alpha
Helix 36	AD9	D	233	239	Right-handed alpha
Helix 37	AE1	D	272	276	Right-handed 310
Helix 38	AE2	D	280	285	Right-handed 310
Helix 39	AE3	D	303	305	Right-handed 310
Helix 40	AE4	D	324	326	Right-handed 310
Helix 41	AE5	D	357	359	Right-handed 310
Helix 42	AE6	D	385	402	Right-handed alpha
Helix 43	AE7	D	459	462	Right-handed 310
Helix 44	AE8	D	463	473	Right-handed alpha
Helix 45	AE9	E	79	83	Right-handed 310
Helix 46	AF1	E	209	214	Right-handed alpha
Helix 47	AF2	E	221	226	Right-handed alpha
Helix 48	AF3	E	235	239	Right-handed 310
Helix 49	AF4	E	272	276	Right-handed 310
Helix 50	AF5	E	280	284	Right-handed 310
Helix 51	AF6	E	303	305	Right-handed 310
Helix 52	AF7	E	324	326	Right-handed 310
Helix 53	AF8	E	357	359	Right-handed 310
Helix 54	AF9	E	385	396	Right-handed alpha
Helix 55	AG1	E	397	403	Right-handed alpha
Helix 56	AG2	E	441	445	Right-handed 310
Helix 57	AG3	E	463	473	Right-handed alpha
Helix 58	AG4	F	23	27	Right-handed 310
Helix 59	AG5	F	209	214	Right-handed alpha
Helix 60	AG6	F	221	225	Right-handed 310
Helix 61	AG7	F	233	240	Right-handed alpha
Helix 62	AG8	F	280	284	Right-handed 310
Helix 63	AG9	F	301	305	Right-handed 310
Helix 64	AH1	F	324	326	Right-handed 310
Helix 65	AH2	F	357	359	Right-handed 310
Helix 66	AH3	F	385	397	Right-handed alpha
Helix 67	AH4	F	397	402	Right-handed alpha
Helix 68	AH5	F	438	443	Right-handed alpha
Helix 69	AH6	F	463	473	Right-handed alpha

There are 49 sheets in PDB entry 5JB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	374	383	anti-parallel
Strand 3	A	96	105	anti-parallel
Strand 4	A	311	312	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	361	372	anti-parallel
Strand 3	A	108	109	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	361	372	anti-parallel
Strand 3	A	342	347	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	61	62	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	248	262	anti-parallel
Strand 3	A	153	160	anti-parallel
Strand 4	A	328	335	anti-parallel
Strand 5	A	71	76	anti-parallel
Strand 6	A	448	451	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	248	262	anti-parallel
Strand 3	E	300	301	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	145	149	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	195	first strand
Strand 2	A	164	171	anti-parallel
Strand 3	A	231	232	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	E	361	383	parallel
Strand 3	E	96	109	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	46	first strand
Strand 2	E	361	383	anti-parallel
Strand 3	E	341	347	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	B	248	263	anti-parallel
Strand 3	B	291	296	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	248	263	anti-parallel
Strand 3	B	153	160	anti-parallel
Strand 4	B	328	335	anti-parallel
Strand 5	B	71	76	anti-parallel
Strand 6	B	448	451	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	361	377	anti-parallel
Strand 3	B	341	347	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	B	361	377	parallel
Strand 3	B	102	109	anti-parallel
Strand 4	B	311	312	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	312	first strand
Strand 2	B	102	109	anti-parallel
Strand 3	B	361	377	anti-parallel
Strand 4	B	43	46	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	380	383	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	123	first strand
Strand 2	B	145	149	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	195	first strand
Strand 2	B	164	171	anti-parallel
Strand 3	B	231	232	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	228	229	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	C	248	255	anti-parallel
Strand 3	C	153	160	anti-parallel
Strand 4	C	328	335	anti-parallel
Strand 5	C	71	76	anti-parallel
Strand 6	C	448	451	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	37	first strand
Strand 2	C	361	383	anti-parallel
Strand 3	C	341	347	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	C	361	383	parallel
Strand 3	C	96	108	anti-parallel
Strand 4	C	311	312	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	312	first strand
Strand 2	C	96	108	anti-parallel
Strand 3	C	361	383	anti-parallel
Strand 4	C	42	46	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	61	62	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	123	first strand
Strand 2	C	145	149	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	259	262	anti-parallel
Strand 3	C	291	294	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	195	first strand
Strand 2	C	164	171	anti-parallel
Strand 3	C	231	232	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	209	first strand
Strand 2	C	228	229	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	D	248	255	anti-parallel
Strand 3	D	153	160	anti-parallel
Strand 4	D	328	334	anti-parallel
Strand 5	D	71	76	anti-parallel
Strand 6	D	448	451	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	312	first strand
Strand 2	D	96	106	anti-parallel
Strand 3	D	374	383	anti-parallel
Strand 4	D	29	38	anti-parallel
Strand 5	D	456	457	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	361	371	anti-parallel
Strand 3	D	341	347	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	361	371	anti-parallel
Strand 3	E	266	267	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	61	62	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	123	first strand
Strand 2	D	145	149	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	171	first strand
Strand 2	D	188	194	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	261	first strand
Strand 2	D	292	293	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	301	first strand
Strand 2	E	248	255	anti-parallel
Strand 3	E	153	160	anti-parallel
Strand 4	E	328	335	anti-parallel
Strand 5	E	71	76	anti-parallel
Strand 6	E	448	451	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	61	62	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	123	first strand
Strand 2	E	145	149	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	194	first strand
Strand 2	E	165	171	anti-parallel
Strand 3	E	231	232	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	262	first strand
Strand 2	E	291	293	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	361	383	anti-parallel
Strand 3	F	42	46	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	342	347	first strand
Strand 2	F	361	383	anti-parallel
Strand 3	F	96	109	anti-parallel
Strand 4	F	310	312	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	310	312	first strand
Strand 2	F	96	109	anti-parallel
Strand 3	F	361	383	anti-parallel
Strand 4	F	35	38	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	61	62	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	254	first strand
Strand 2	F	153	160	anti-parallel
Strand 3	F	328	335	anti-parallel
Strand 4	F	71	76	anti-parallel
Strand 5	F	448	451	parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	123	first strand
Strand 2	F	145	149	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	195	first strand
Strand 2	F	164	171	anti-parallel
Strand 3	F	229	232	anti-parallel
Strand 4	F	200	201	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	262	first strand
Strand 2	F	291	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JB1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JB1