Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JBE entry

There are 2 chains in PDB entry 5JBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 761	SER 1614
B	MET 761	ASN 1177

There are 68 helices in PDB entry 5JBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	764	769	Right-handed 310
Helix 2	AA2	A	815	817	Right-handed 310
Helix 3	AA3	A	821	834	Right-handed alpha
Helix 4	AA4	A	839	843	Right-handed 310
Helix 5	AA5	A	845	850	Right-handed alpha
Helix 6	AA6	A	857	880	Right-handed alpha
Helix 7	AA7	A	882	894	Right-handed alpha
Helix 8	AA8	A	895	905	Right-handed 310
Helix 9	AA9	A	906	910	Right-handed 310
Helix 10	AB1	A	941	945	Right-handed 310
Helix 11	AB2	A	954	958	Right-handed 310
Helix 12	AB3	A	980	996	Right-handed alpha
Helix 13	AB4	A	996	1002	Right-handed alpha
Helix 14	AB5	A	1022	1037	Right-handed alpha
Helix 15	AB6	A	1041	1048	Right-handed alpha
Helix 16	AB7	A	1057	1066	Right-handed alpha
Helix 17	AB8	A	1074	1085	Right-handed alpha
Helix 18	AB9	A	1095	1100	Right-handed alpha
Helix 19	AC1	A	1123	1139	Right-handed alpha
Helix 20	AC2	A	1151	1167	Right-handed alpha
Helix 21	AC3	A	1177	1188	Right-handed alpha
Helix 22	AC4	A	1197	1201	Right-handed alpha
Helix 23	AC5	A	1214	1229	Right-handed alpha
Helix 24	AC6	A	1289	1293	Right-handed 310
Helix 25	AC7	A	1361	1365	Right-handed 310
Helix 26	AC8	A	1376	1381	Right-handed alpha
Helix 27	AC9	A	1401	1409	Right-handed alpha
Helix 28	AD1	A	1409	1416	Right-handed alpha
Helix 29	AD2	A	1458	1472	Right-handed alpha
Helix 30	AD3	A	1525	1533	Right-handed alpha
Helix 31	AD4	A	1536	1544	Right-handed alpha
Helix 32	AD5	A	1545	1549	Right-handed 310
Helix 33	AD6	A	1569	1571	Right-handed 310
Helix 34	AD7	A	1610	1614	Right-handed 310
Helix 35	AD8	B	764	769	Right-handed 310
Helix 36	AD9	B	815	817	Right-handed 310
Helix 37	AE1	B	821	834	Right-handed alpha
Helix 38	AE2	B	839	843	Right-handed 310
Helix 39	AE3	B	845	850	Right-handed alpha
Helix 40	AE4	B	857	880	Right-handed alpha
Helix 41	AE5	B	882	894	Right-handed alpha
Helix 42	AE6	B	895	905	Right-handed 310
Helix 43	AE7	B	906	910	Right-handed 310
Helix 44	AE8	B	941	945	Right-handed 310
Helix 45	AE9	B	954	958	Right-handed 310
Helix 46	AF1	B	980	996	Right-handed alpha
Helix 47	AF2	B	996	1002	Right-handed alpha
Helix 48	AF3	B	1022	1037	Right-handed alpha
Helix 49	AF4	B	1041	1048	Right-handed alpha
Helix 50	AF5	B	1057	1066	Right-handed alpha
Helix 51	AF6	B	1074	1086	Right-handed alpha
Helix 52	AF7	B	1095	1100	Right-handed alpha
Helix 53	AF8	B	1123	1139	Right-handed alpha
Helix 54	AF9	B	1151	1167	Right-handed alpha
Helix 55	AG1	B	1177	1188	Right-handed alpha
Helix 56	AG2	B	1197	1201	Right-handed alpha
Helix 57	AG3	B	1214	1229	Right-handed alpha
Helix 58	AG4	B	1289	1293	Right-handed 310
Helix 59	AG5	B	1361	1365	Right-handed 310
Helix 60	AG6	B	1376	1381	Right-handed alpha
Helix 61	AG7	B	1401	1409	Right-handed alpha
Helix 62	AG8	B	1409	1416	Right-handed alpha
Helix 63	AG9	B	1458	1472	Right-handed alpha
Helix 64	AH1	B	1525	1533	Right-handed alpha
Helix 65	AH2	B	1536	1544	Right-handed alpha
Helix 66	AH3	B	1545	1549	Right-handed 310
Helix 67	AH4	B	1569	1571	Right-handed 310
Helix 68	AH5	B	1610	1614	Right-handed 310

There are 16 sheets in PDB entry 5JBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	791	first strand
Strand 2	A	812	813	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	795	797	first strand
Strand 2	A	803	805	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1484	1485	first strand
Strand 2	A	974	976	anti-parallel
Strand 3	A	1573	1577	anti-parallel
Strand 4	A	925	929	anti-parallel
Strand 5	A	1490	1499	anti-parallel
Strand 6	A	1516	1523	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1051	1052	first strand
Strand 2	A	1011	1014	parallel
Strand 3	A	1475	1480	parallel
Strand 4	A	1420	1423	parallel
Strand 5	A	1384	1386	parallel
Strand 6	A	1192	1196	parallel
Strand 7	A	1117	1120	parallel
Strand 8	A	1072	1073	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1107	1108	first strand
Strand 2	A	1233	1239	anti-parallel
Strand 3	A	1242	1247	anti-parallel
Strand 4	A	1269	1274	anti-parallel
Strand 5	A	1342	1350	anti-parallel
Strand 6	A	1296	1303	anti-parallel
Strand 7	A	1320	1322	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1308	1309	first strand
Strand 2	A	1296	1303	anti-parallel
Strand 3	A	1342	1350	anti-parallel
Strand 4	A	1336	1337	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1282	1287	first strand
Strand 2	A	1328	1333	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1428	1429	first strand
Strand 2	A	1441	1443	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	791	first strand
Strand 2	B	812	813	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	795	797	first strand
Strand 2	B	803	805	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1484	1485	first strand
Strand 2	B	974	976	anti-parallel
Strand 3	B	1573	1577	anti-parallel
Strand 4	B	925	929	anti-parallel
Strand 5	B	1490	1499	anti-parallel
Strand 6	B	1516	1523	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1051	1052	first strand
Strand 2	B	1011	1014	parallel
Strand 3	B	1475	1480	parallel
Strand 4	B	1420	1423	parallel
Strand 5	B	1384	1386	parallel
Strand 6	B	1192	1196	parallel
Strand 7	B	1117	1120	parallel
Strand 8	B	1072	1073	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1108	first strand
Strand 2	B	1233	1239	anti-parallel
Strand 3	B	1242	1247	anti-parallel
Strand 4	B	1269	1274	anti-parallel
Strand 5	B	1342	1350	anti-parallel
Strand 6	B	1296	1303	anti-parallel
Strand 7	B	1320	1322	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1308	1309	first strand
Strand 2	B	1296	1303	anti-parallel
Strand 3	B	1342	1350	anti-parallel
Strand 4	B	1336	1337	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1282	1287	first strand
Strand 2	B	1328	1333	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1428	1429	first strand
Strand 2	B	1441	1443	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBE