Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JBG entry

There are 2 chains in PDB entry 5JBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 673
X
 G 2 G 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5JBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 16Right-handed alpha
Helix 2
AA2
A
29 44Right-handed alpha
Helix 3
AA3
A
56 67Right-handed alpha
Helix 4
AA4
A
68 74Right-handed 310
Helix 5
AA5
A
89 96Right-handed alpha
Helix 6
AA6
A
104 112Right-handed alpha
Helix 7
AA7
A
121 125Right-handed 310
Helix 8
AA8
A
133 136Right-handed 310
Helix 9
AA9
A
140 155Right-handed alpha
Helix 10
AB1
A
177 193Right-handed alpha
Helix 11
AB2
A
227 245Right-handed alpha
Helix 12
AB3
A
255 272Right-handed alpha
Helix 13
AB4
A
274 297Right-handed alpha
Helix 14
AB5
A
298 312Right-handed alpha
Helix 15
AB6
A
318 340Right-handed alpha
Helix 16
AB7
A
341 345Right-handed 310
Helix 17
AB8
A
346 360Right-handed alpha
Helix 18
AB9
A
374 388Right-handed alpha
Helix 19
AC1
A
389 392Right-handed 310
Helix 20
AC2
A
414 427Right-handed alpha
Helix 21
AC3
A
437 440Right-handed 310
Helix 22
AC4
A
459 468Right-handed alpha
Helix 23
AC5
A
485 510Right-handed alpha
Helix 24
AC6
A
512 543Right-handed alpha
Helix 25
AC7
A
546 549Right-handed 310
Helix 26
AC8
A
581 584Right-handed 310
Helix 27
AC9
A
649 653Right-handed 310
Helix 28
AD1
A
661 670Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5JBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
99 103parallel
Strand 3
A
50 54parallel
Strand 4
A
127 131parallel
Strand 5
A
162 167parallel
Strand 6
A
20 23parallel
Strand 7
A
196 198parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 221first strand
Strand 2
A
476 482parallel
Strand 3
A
450 454parallel
Strand 4
A
368 371parallel
Strand 5
A
432 435parallel
Strand 6
A
398 401parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 563first strand
Strand 2
A
551 554anti-parallel
Strand 3
A
636 639anti-parallel
Strand 4
A
644 646anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 570first strand
Strand 2
A
574 577anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 592first strand
Strand 2
A
602 610anti-parallel
Strand 3
A
616 623anti-parallel
Strand 4
A
626 631anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il