Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JBJ entry

There are 3 chains in PDB entry 5JBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLN 670
X
 G 1 C 12
Y
 G 13 C 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5JBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 16Right-handed alpha
Helix 2
AA2
A
29 44Right-handed alpha
Helix 3
AA3
A
57 67Right-handed alpha
Helix 4
AA4
A
68 74Right-handed 310
Helix 5
AA5
A
89 97Right-handed alpha
Helix 6
AA6
A
104 113Right-handed alpha
Helix 7
AA7
A
133 136Right-handed 310
Helix 8
AA8
A
140 155Right-handed alpha
Helix 9
AA9
A
177 192Right-handed alpha
Helix 10
AB1
A
227 245Right-handed alpha
Helix 11
AB2
A
255 273Right-handed alpha
Helix 12
AB3
A
274 297Right-handed alpha
Helix 13
AB4
A
298 312Right-handed alpha
Helix 14
AB5
A
319 341Right-handed alpha
Helix 15
AB6
A
347 360Right-handed alpha
Helix 16
AB7
A
374 387Right-handed alpha
Helix 17
AB8
A
414 427Right-handed alpha
Helix 18
AB9
A
459 468Right-handed alpha
Helix 19
AC1
A
501 510Right-handed alpha
Helix 20
AC2
A
512 543Right-handed alpha
Helix 21
AC3
A
579 584Right-handed 310
Helix 22
AC4
A
661 670Right-handed alpha
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There are 4 sheets in PDB entry 5JBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
99 103parallel
Strand 3
A
50 54parallel
Strand 4
A
127 131parallel
Strand 5
A
162 167parallel
Strand 6
A
20 23parallel
Strand 7
A
196 198parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 401first strand
Strand 2
A
432 435parallel
Strand 3
A
368 371parallel
Strand 4
A
450 453parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 563first strand
Strand 2
A
551 554anti-parallel
Strand 3
A
636 639anti-parallel
Strand 4
A
644 645anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 570first strand
Strand 2
A
574 577anti-parallel
Strand 3
A
626 631anti-parallel
Strand 4
A
616 623anti-parallel
Strand 5
A
604 610anti-parallel
Strand 6
A
586 592anti-parallel
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