Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JBK entry

There are 2 chains in PDB entry 5JBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 465
B
 MET 1LYS 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5JBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
30 37Right-handed alpha
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
93 110Right-handed alpha
Helix 7
AA7
A
124 132Right-handed alpha
Helix 8
AA8
A
133 136Right-handed 310
Helix 9
AA9
A
138 155Right-handed alpha
Helix 10
AB1
A
166 176Right-handed alpha
Helix 11
AB2
A
188 212Right-handed alpha
Helix 12
AB3
A
236 251Right-handed alpha
Helix 13
AB4
A
251 260Right-handed alpha
Helix 14
AB5
A
264 272Right-handed alpha
Helix 15
AB6
A
273 275Right-handed 310
Helix 16
AB7
A
279 287Right-handed alpha
Helix 17
AB8
A
343 358Right-handed alpha
Helix 18
AB9
A
374 378Right-handed 310
Helix 19
AC1
A
379 385Right-handed alpha
Helix 20
AC2
A
386 406Right-handed alpha
Helix 21
AC3
A
424 428Right-handed 310
Helix 22
AC4
A
451 453Right-handed 310
Helix 23
AC5
A
454 463Right-handed alpha
Helix 24
AC6
B
14 19Right-handed alpha
Helix 25
AC7
B
23 27Right-handed 310
Helix 26
AC8
B
30 38Right-handed alpha
Helix 27
AC9
B
53 56Right-handed 310
Helix 28
AD1
B
57 68Right-handed alpha
Helix 29
AD2
B
78 83Right-handed alpha
Helix 30
AD3
B
93 110Right-handed alpha
Helix 31
AD4
B
124 132Right-handed alpha
Helix 32
AD5
B
133 136Right-handed 310
Helix 33
AD6
B
139 155Right-handed alpha
Helix 34
AD7
B
166 176Right-handed alpha
Helix 35
AD8
B
188 212Right-handed alpha
Helix 36
AD9
B
236 251Right-handed alpha
Helix 37
AE1
B
251 260Right-handed alpha
Helix 38
AE2
B
264 272Right-handed alpha
Helix 39
AE3
B
273 275Right-handed 310
Helix 40
AE4
B
279 287Right-handed alpha
Helix 41
AE5
B
343 358Right-handed alpha
Helix 42
AE6
B
374 378Right-handed 310
Helix 43
AE7
B
379 385Right-handed alpha
Helix 44
AE8
B
386 406Right-handed alpha
Helix 45
AE9
B
424 428Right-handed 310
Helix 46
AF1
B
451 453Right-handed 310
Helix 47
AF2
B
454 463Right-handed alpha
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There are 6 sheets in PDB entry 5JBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
72 76parallel
Strand 3
A
113 119parallel
Strand 4
A
160 165parallel
Strand 5
A
219 225parallel
Strand 6
A
293 296parallel
Strand 7
A
363 367parallel
Strand 8
A
411 417parallel
Strand 9
A
8 12parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
300 305parallel
Strand 3
A
319 322anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 438first strand
Strand 2
A
446 448anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
72 76parallel
Strand 3
B
113 119parallel
Strand 4
B
160 165parallel
Strand 5
B
219 225parallel
Strand 6
B
293 296parallel
Strand 7
B
363 367parallel
Strand 8
B
411 417parallel
Strand 9
B
8 12parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 231first strand
Strand 2
B
300 305parallel
Strand 3
B
319 322anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 439first strand
Strand 2
B
445 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il