Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JBL entry

There are 5 chains in PDB entry 5JBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	GLY 172
B	ASN 2	PRO 173
C	ASN 2	PRO 173
D	ASN 2	PRO 173
E	ASN 2	PRO 173

There are 15 helices in PDB entry 5JBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	73	Right-handed alpha
Helix 2	AA2	A	92	94	Right-handed 310
Helix 3	AA3	A	122	134	Right-handed alpha
Helix 4	AA4	B	58	73	Right-handed alpha
Helix 5	AA5	B	92	94	Right-handed 310
Helix 6	AA6	B	122	133	Right-handed alpha
Helix 7	AA7	C	58	73	Right-handed alpha
Helix 8	AA8	C	92	94	Right-handed 310
Helix 9	AA9	C	122	133	Right-handed alpha
Helix 10	AB1	D	58	73	Right-handed alpha
Helix 11	AB2	D	92	94	Right-handed 310
Helix 12	AB3	D	122	133	Right-handed alpha
Helix 13	AB4	E	58	73	Right-handed alpha
Helix 14	AB5	E	92	94	Right-handed 310
Helix 15	AB6	E	122	133	Right-handed alpha

There are 19 sheets in PDB entry 5JBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	162	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	38	46	anti-parallel
Strand 3	A	109	116	anti-parallel
Strand 4	A	96	106	anti-parallel
Strand 5	A	80	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	155	157	parallel
Strand 3	A	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	12	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	162	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	38	46	anti-parallel
Strand 3	B	109	116	anti-parallel
Strand 4	B	96	106	anti-parallel
Strand 5	B	80	82	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	155	157	parallel
Strand 3	B	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	138	145	anti-parallel
Strand 3	C	162	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	38	46	anti-parallel
Strand 3	C	109	116	anti-parallel
Strand 4	C	96	106	anti-parallel
Strand 5	C	80	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	155	157	parallel
Strand 3	C	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	12	first strand
Strand 2	D	138	145	anti-parallel
Strand 3	D	162	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	38	46	anti-parallel
Strand 3	D	109	116	anti-parallel
Strand 4	D	96	106	anti-parallel
Strand 5	D	80	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	D	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	155	157	parallel
Strand 3	D	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	12	first strand
Strand 2	E	138	145	anti-parallel
Strand 3	E	162	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	38	46	anti-parallel
Strand 3	E	109	116	anti-parallel
Strand 4	E	96	106	anti-parallel
Strand 5	E	80	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	24	first strand
Strand 2	E	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	155	157	parallel
Strand 3	E	147	149	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBL