Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JBO entry

There is 1 chain in PDB entry 5JBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6ARG 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5JBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 24Right-handed alpha
Helix 2
AA2
A
35 41Right-handed alpha
Helix 3
AA3
A
58 73Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
98 115Right-handed alpha
Helix 6
AA6
A
129 137Right-handed alpha
Helix 7
AA7
A
138 140Right-handed 310
Helix 8
AA8
A
141 161Right-handed alpha
Helix 9
AA9
A
172 182Right-handed alpha
Helix 10
AB1
A
204 228Right-handed alpha
Helix 11
AB2
A
228 233Right-handed alpha
Helix 12
AB3
A
252 267Right-handed alpha
Helix 13
AB4
A
267 276Right-handed alpha
Helix 14
AB5
A
281 289Right-handed alpha
Helix 15
AB6
A
290 292Right-handed 310
Helix 16
AB7
A
296 304Right-handed alpha
Helix 17
AB8
A
361 377Right-handed alpha
Helix 18
AB9
A
391 395Right-handed 310
Helix 19
AC1
A
396 401Right-handed alpha
Helix 20
AC2
A
403 425Right-handed alpha
Helix 21
AC3
A
441 445Right-handed 310
Helix 22
AC4
A
465 480Right-handed alpha
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There are 4 sheets in PDB entry 5JBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
77 81parallel
Strand 3
A
118 124parallel
Strand 4
A
166 171parallel
Strand 5
A
235 240parallel
Strand 6
A
310 314parallel
Strand 7
A
380 385parallel
Strand 8
A
428 434parallel
Strand 9
A
13 17parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
318 323parallel
Strand 3
A
337 340anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
359 360anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 455first strand
Strand 2
A
462 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il