Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JBQ entry

There are 4 chains in PDB entry 5JBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 393
B
 SER 1SER 1
B
 ASN 3ASN 3
B
 TYR 7TYR 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed 310
Helix 2
AA2
A
23 40Right-handed alpha
Helix 3
AA3
A
45 51Right-handed alpha
Helix 4
AA4
A
83 94Right-handed alpha
Helix 5
AA5
A
112 126Right-handed alpha
Helix 6
AA6
A
136 140Right-handed 310
Helix 7
AA7
A
143 160Right-handed alpha
Helix 8
AA8
A
163 167Right-handed 310
Helix 9
AA9
A
173 179Right-handed alpha
Helix 10
AB1
A
181 199Right-handed alpha
Helix 11
AB2
A
204 208Right-handed 310
Helix 12
AB3
A
282 286Right-handed 310
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There are 7 sheets in PDB entry 5JBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
11 17parallel
Strand 4
A
101 106parallel
Strand 5
A
130 135parallel
Strand 6
A
169 171parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
61 63anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
291 293anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
251 260anti-parallel
Strand 5
A
273 278anti-parallel
Strand 6
A
224 230anti-parallel
Strand 7
A
217 220anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
291 293anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
251 260anti-parallel
Strand 5
A
263 265anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
267 269anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 310first strand
Strand 2
A
355 368anti-parallel
Strand 3
A
335 342anti-parallel
Strand 4
A
329 332anti-parallel
Strand 5
A
373 378anti-parallel
Strand 6
A
381 393anti-parallel
Strand 7
A
299 310anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
349 350anti-parallel
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