Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JBS entry

There are 4 chains in PDB entry 5JBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 97VAL 238
B
 SER 97GLU 234
C
 SER 97GLU 234
D
 SER 97GLY 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5JBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 116Right-handed alpha
Helix 2
AA2
A
121 133Right-handed alpha
Helix 3
AA3
A
134 143Right-handed alpha
Helix 4
AA4
A
144 146Right-handed 310
Helix 5
AA5
A
150 156Right-handed alpha
Helix 6
AA6
A
208 212Right-handed 310
Helix 7
AA7
A
213 220Right-handed alpha
Helix 8
AA8
B
98 116Right-handed alpha
Helix 9
AA9
B
121 132Right-handed alpha
Helix 10
AB1
B
134 144Right-handed alpha
Helix 11
AB2
B
208 212Right-handed 310
Helix 12
AB3
B
213 220Right-handed alpha
Helix 13
AB4
C
98 116Right-handed alpha
Helix 14
AB5
C
121 132Right-handed alpha
Helix 15
AB6
C
134 145Right-handed alpha
Helix 16
AB7
C
208 212Right-handed 310
Helix 17
AB8
C
213 220Right-handed alpha
Helix 18
AB9
D
98 116Right-handed alpha
Helix 19
AC1
D
121 133Right-handed alpha
Helix 20
AC2
D
134 143Right-handed alpha
Helix 21
AC3
D
144 146Right-handed 310
Helix 22
AC4
D
152 156Right-handed alpha
Helix 23
AC5
D
208 212Right-handed 310
Helix 24
AC6
D
213 220Right-handed alpha
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There are 4 sheets in PDB entry 5JBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 170first strand
Strand 2
A
175 186anti-parallel
Strand 3
A
194 206anti-parallel
Strand 4
A
224 233anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 170first strand
Strand 2
B
175 186anti-parallel
Strand 3
B
194 206anti-parallel
Strand 4
B
224 233anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 170first strand
Strand 2
C
175 185anti-parallel
Strand 3
C
194 206anti-parallel
Strand 4
C
224 233anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 170first strand
Strand 2
D
175 186anti-parallel
Strand 3
D
194 206anti-parallel
Strand 4
D
224 233anti-parallel
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