Analysis of interatomic Contacts of Structural Units in PDB entry:
5JBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JBW entry

There is 1 chain in PDB entry 5JBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ARG 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
27 43Right-handed alpha
Helix 3
AA3
A
65 70Right-handed alpha
Helix 4
AA4
A
73 94Right-handed alpha
Helix 5
AA5
A
108 117Right-handed alpha
Helix 6
AA6
A
131 136Right-handed 310
Helix 7
AA7
A
142 163Right-handed alpha
Helix 8
AA8
A
168 174Right-handed alpha
Helix 9
AA9
A
185 199Right-handed alpha
Helix 10
AB1
A
201 216Right-handed alpha
Helix 11
AB2
A
219 235Right-handed alpha
Helix 12
AB3
A
237 250Right-handed alpha
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There are 2 sheets in PDB entry 5JBW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
12 17anti-parallel
Strand 3
A
49 54parallel
Strand 4
A
97 102parallel
Strand 5
A
119 122parallel
Strand 6
A
179 180parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
105 107parallel
Strand 3
A
127 129parallel
Strand 4
A
166 167anti-parallel
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