Analysis of interatomic Contacts of Structural Units in PDB entry:
5JC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JC7 entry

There are 4 chains in PDB entry 5JC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 298	PHE 989
B	ASP 298	TYR 991
X	G 1	C 24
Y	G 2	C 25

There are 52 helices in PDB entry 5JC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	302	314	Right-handed alpha
Helix 2	AA2	A	327	345	Right-handed alpha
Helix 3	AA3	A	358	369	Right-handed alpha
Helix 4	AA4	A	369	375	Right-handed alpha
Helix 5	AA5	A	392	400	Right-handed alpha
Helix 6	AA6	A	407	416	Right-handed alpha
Helix 7	AA7	A	425	429	Right-handed 310
Helix 8	AA8	A	437	440	Right-handed 310
Helix 9	AA9	A	444	460	Right-handed alpha
Helix 10	AB1	A	490	505	Right-handed alpha
Helix 11	AB2	A	516	524	Right-handed alpha
Helix 12	AB3	A	540	558	Right-handed alpha
Helix 13	AB4	A	567	584	Right-handed alpha
Helix 14	AB5	A	586	609	Right-handed alpha
Helix 15	AB6	A	610	630	Right-handed alpha
Helix 16	AB7	A	645	667	Right-handed alpha
Helix 17	AB8	A	668	672	Right-handed 310
Helix 18	AB9	A	673	687	Right-handed alpha
Helix 19	AC1	A	701	714	Right-handed alpha
Helix 20	AC2	A	715	722	Right-handed alpha
Helix 21	AC3	A	741	755	Right-handed alpha
Helix 22	AC4	A	764	767	Right-handed 310
Helix 23	AC5	A	786	796	Right-handed alpha
Helix 24	AC6	A	813	838	Right-handed alpha
Helix 25	AC7	A	839	865	Right-handed alpha
Helix 26	AC8	A	978	982	Right-handed 310
Helix 27	AC9	B	302	314	Right-handed alpha
Helix 28	AD1	B	327	345	Right-handed alpha
Helix 29	AD2	B	358	369	Right-handed alpha
Helix 30	AD3	B	369	375	Right-handed alpha
Helix 31	AD4	B	392	400	Right-handed alpha
Helix 32	AD5	B	407	416	Right-handed alpha
Helix 33	AD6	B	425	429	Right-handed 310
Helix 34	AD7	B	437	440	Right-handed 310
Helix 35	AD8	B	444	460	Right-handed alpha
Helix 36	AD9	B	490	505	Right-handed alpha
Helix 37	AE1	B	516	524	Right-handed alpha
Helix 38	AE2	B	540	558	Right-handed alpha
Helix 39	AE3	B	567	584	Right-handed alpha
Helix 40	AE4	B	586	609	Right-handed alpha
Helix 41	AE5	B	610	630	Right-handed alpha
Helix 42	AE6	B	645	667	Right-handed alpha
Helix 43	AE7	B	668	672	Right-handed 310
Helix 44	AE8	B	673	687	Right-handed alpha
Helix 45	AE9	B	701	714	Right-handed alpha
Helix 46	AF1	B	715	722	Right-handed alpha
Helix 47	AF2	B	741	755	Right-handed alpha
Helix 48	AF3	B	764	767	Right-handed 310
Helix 49	AF4	B	786	796	Right-handed alpha
Helix 50	AF5	B	813	838	Right-handed alpha
Helix 51	AF6	B	839	865	Right-handed alpha
Helix 52	AF7	B	978	982	Right-handed 310

There are 10 sheets in PDB entry 5JC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	382	first strand
Strand 2	A	402	406	parallel
Strand 3	A	352	356	parallel
Strand 4	A	431	435	parallel
Strand 5	A	475	480	parallel
Strand 6	A	318	321	parallel
Strand 7	A	509	512	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	531	first strand
Strand 2	A	803	806	parallel
Strand 3	A	777	780	parallel
Strand 4	A	695	698	parallel
Strand 5	A	759	762	parallel
Strand 6	A	725	728	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	878	881	anti-parallel
Strand 3	A	962	965	anti-parallel
Strand 4	A	973	974	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	894	897	first strand
Strand 2	A	901	904	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	915	first strand
Strand 2	A	934	936	anti-parallel
Strand 3	A	942	948	anti-parallel
Strand 4	A	953	957	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	382	first strand
Strand 2	B	402	406	parallel
Strand 3	B	352	356	parallel
Strand 4	B	431	435	parallel
Strand 5	B	475	480	parallel
Strand 6	B	318	321	parallel
Strand 7	B	509	512	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	531	first strand
Strand 2	B	803	806	parallel
Strand 3	B	777	780	parallel
Strand 4	B	695	698	parallel
Strand 5	B	759	762	parallel
Strand 6	B	725	728	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	878	881	anti-parallel
Strand 3	B	962	965	anti-parallel
Strand 4	B	973	974	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	894	897	first strand
Strand 2	B	901	904	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	915	first strand
Strand 2	B	934	936	anti-parallel
Strand 3	B	942	948	anti-parallel
Strand 4	B	953	957	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JC7