Analysis of interatomic Contacts of Structural Units in PDB entry:
5JCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JCE entry

There are 2 chains in PDB entry 5JCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29GLN 320
B
 ALA 29GLN 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5JCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 63Right-handed alpha
Helix 2
AA2
A
66 74Right-handed alpha
Helix 3
AA3
A
120 128Right-handed alpha
Helix 4
AA4
A
134 142Right-handed alpha
Helix 5
AA5
A
184 193Right-handed alpha
Helix 6
AA6
A
195 204Right-handed alpha
Helix 7
AA7
B
55 63Right-handed alpha
Helix 8
AA8
B
66 73Right-handed alpha
Helix 9
AA9
B
120 128Right-handed alpha
Helix 10
AB1
B
134 142Right-handed alpha
Helix 11
AB2
B
184 192Right-handed alpha
Helix 12
AB3
B
195 203Right-handed alpha
Helix 13
AB4
B
207 211Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 5JCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
104 107anti-parallel
Strand 3
A
91 100anti-parallel
Strand 4
A
40 48anti-parallel
Strand 5
A
172 178parallel
Strand 6
A
216 222anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
155 157anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 248first strand
Strand 2
A
253 256anti-parallel
Strand 3
A
265 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
297 305anti-parallel
Strand 3
A
311 318anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 97first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
172 178parallel
Strand 4
B
216 222anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
155 157anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 248first strand
Strand 2
B
253 257anti-parallel
Strand 3
B
265 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
297 305anti-parallel
Strand 3
B
311 318anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il