Analysis of interatomic Contacts of Structural Units in PDB entry:
5JCH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JCH entry

There are 6 chains in PDB entry 5JCH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 298	ASP 988
X	G 1	C 10
Y	G 1	C 10
B	ASP 298	ASP 988
U	G 1	C 10
V	G 1	C 10

There are 55 helices in PDB entry 5JCH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	302	315	Right-handed alpha
Helix 2	AA2	A	327	346	Right-handed alpha
Helix 3	AA3	A	359	369	Right-handed alpha
Helix 4	AA4	A	369	375	Right-handed alpha
Helix 5	AA5	A	392	400	Right-handed alpha
Helix 6	AA6	A	407	416	Right-handed alpha
Helix 7	AA7	A	425	429	Right-handed 310
Helix 8	AA8	A	437	440	Right-handed 310
Helix 9	AA9	A	444	466	Right-handed alpha
Helix 10	AB1	A	490	505	Right-handed alpha
Helix 11	AB2	A	516	524	Right-handed alpha
Helix 12	AB3	A	540	558	Right-handed alpha
Helix 13	AB4	A	567	584	Right-handed alpha
Helix 14	AB5	A	586	609	Right-handed alpha
Helix 15	AB6	A	610	630	Right-handed alpha
Helix 16	AB7	A	645	667	Right-handed alpha
Helix 17	AB8	A	668	672	Right-handed 310
Helix 18	AB9	A	673	688	Right-handed alpha
Helix 19	AC1	A	701	714	Right-handed alpha
Helix 20	AC2	A	715	722	Right-handed alpha
Helix 21	AC3	A	741	755	Right-handed alpha
Helix 22	AC4	A	764	767	Right-handed 310
Helix 23	AC5	A	786	797	Right-handed alpha
Helix 24	AC6	A	813	838	Right-handed alpha
Helix 25	AC7	A	839	866	Right-handed alpha
Helix 26	AC8	A	873	875	Right-handed 310
Helix 27	AC9	A	909	911	Right-handed 310
Helix 28	AD1	A	978	982	Right-handed 310
Helix 29	AD2	B	302	315	Right-handed alpha
Helix 30	AD3	B	327	346	Right-handed alpha
Helix 31	AD4	B	359	369	Right-handed alpha
Helix 32	AD5	B	369	375	Right-handed alpha
Helix 33	AD6	B	392	400	Right-handed alpha
Helix 34	AD7	B	407	416	Right-handed alpha
Helix 35	AD8	B	425	429	Right-handed 310
Helix 36	AD9	B	437	440	Right-handed 310
Helix 37	AE1	B	444	466	Right-handed alpha
Helix 38	AE2	B	490	505	Right-handed alpha
Helix 39	AE3	B	516	524	Right-handed alpha
Helix 40	AE4	B	540	558	Right-handed alpha
Helix 41	AE5	B	567	584	Right-handed alpha
Helix 42	AE6	B	586	609	Right-handed alpha
Helix 43	AE7	B	610	630	Right-handed alpha
Helix 44	AE8	B	645	667	Right-handed alpha
Helix 45	AE9	B	668	672	Right-handed 310
Helix 46	AF1	B	673	688	Right-handed alpha
Helix 47	AF2	B	701	714	Right-handed alpha
Helix 48	AF3	B	715	722	Right-handed alpha
Helix 49	AF4	B	741	755	Right-handed alpha
Helix 50	AF5	B	764	767	Right-handed 310
Helix 51	AF6	B	786	797	Right-handed alpha
Helix 52	AF7	B	813	838	Right-handed alpha
Helix 53	AF8	B	839	866	Right-handed alpha
Helix 54	AF9	B	909	911	Right-handed 310
Helix 55	AG1	B	978	982	Right-handed 310

There are 10 sheets in PDB entry 5JCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	383	first strand
Strand 2	A	402	406	parallel
Strand 3	A	352	356	parallel
Strand 4	A	431	435	parallel
Strand 5	A	475	480	parallel
Strand 6	A	318	321	parallel
Strand 7	A	509	512	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	534	first strand
Strand 2	A	803	809	parallel
Strand 3	A	777	781	parallel
Strand 4	A	695	698	parallel
Strand 5	A	759	762	parallel
Strand 6	A	725	728	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	877	881	anti-parallel
Strand 3	A	962	966	anti-parallel
Strand 4	A	973	974	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	894	897	first strand
Strand 2	A	901	904	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	916	first strand
Strand 2	A	933	936	anti-parallel
Strand 3	A	942	948	anti-parallel
Strand 4	A	953	957	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	383	first strand
Strand 2	B	402	406	parallel
Strand 3	B	352	356	parallel
Strand 4	B	431	435	parallel
Strand 5	B	475	480	parallel
Strand 6	B	318	321	parallel
Strand 7	B	509	512	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	534	first strand
Strand 2	B	803	809	parallel
Strand 3	B	777	781	parallel
Strand 4	B	695	698	parallel
Strand 5	B	759	762	parallel
Strand 6	B	725	728	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	878	881	anti-parallel
Strand 3	B	962	965	anti-parallel
Strand 4	B	973	974	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	894	897	first strand
Strand 2	B	901	904	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	916	first strand
Strand 2	B	933	936	anti-parallel
Strand 3	B	942	948	anti-parallel
Strand 4	B	953	957	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JCH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JCH