Analysis of interatomic Contacts of Structural Units in PDB entry:
5JCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JCK entry

There is 1 chain in PDB entry 5JCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ILE 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5JCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
47 57Right-handed 310
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
79 87Right-handed alpha
Helix 5
AA5
A
129 134Right-handed 310
Helix 6
AA6
A
148 162Right-handed alpha
Helix 7
AA7
A
173 186Right-handed alpha
Helix 8
AA8
A
205 219Right-handed alpha
Helix 9
AA9
A
266 270Right-handed 310
Helix 10
AB1
A
305 308Right-handed 310
Helix 11
AB2
A
315 335Right-handed alpha
Helix 12
AB3
A
401 415Right-handed alpha
Helix 13
AB4
A
420 426Right-handed alpha
Helix 14
AB5
A
427 435Right-handed alpha
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There are 7 sheets in PDB entry 5JCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
35 38parallel
Strand 3
A
5 12parallel
Strand 4
A
113 121parallel
Strand 5
A
105 108anti-parallel
Strand 6
A
96 100anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
35 38parallel
Strand 3
A
5 12parallel
Strand 4
A
113 121parallel
Strand 5
A
293 295parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
262 264anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
255 258parallel
Strand 3
A
166 170parallel
Strand 4
A
189 194parallel
Strand 5
A
222 225parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 234first strand
Strand 2
A
240 245anti-parallel
Strand 3
A
250 252anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
279 281anti-parallel
Strand 3
A
300 304parallel
Strand 4
A
309 312anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 361anti-parallel
Strand 3
A
391 398anti-parallel
Strand 4
A
381 388anti-parallel
Strand 5
A
366 372anti-parallel
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