Analysis of interatomic Contacts of Structural Units in PDB entry:
5JCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JCP entry

There are 2 chains in PDB entry 5JCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 906GLN 180
A
 GLY 906GLN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5JCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
908 912Right-handed 310
Helix 2
AA2
B
920 934Right-handed alpha
Helix 3
AA3
B
946 961Right-handed alpha
Helix 4
AA4
B
962 964Right-handed 310
Helix 5
AA5
B
972 987Right-handed alpha
Helix 6
AA6
B
993 995Right-handed 310
Helix 7
AA7
B
996 1005Right-handed alpha
Helix 8
AA8
B
1008 1023Right-handed alpha
Helix 9
AA9
B
1024 1044Right-handed alpha
Helix 10
AB1
B
1044 1049Right-handed alpha
Helix 11
AB2
B
1051 1065Right-handed alpha
Helix 12
AB3
B
1070 1083Right-handed alpha
Helix 13
AB4
B
1083 1088Right-handed alpha
Helix 14
AB5
B
1091 1100Right-handed alpha
Helix 15
AB6
B
17 26Right-handed alpha
Helix 16
AB7
B
63 67Right-handed 310
Helix 17
AB8
B
69 74Right-handed 310
Helix 18
AB9
B
88 98Right-handed alpha
Helix 19
AC1
B
98 107Right-handed alpha
Helix 20
AC2
B
118 122Right-handed 310
Helix 21
AC3
B
124 134Right-handed alpha
Helix 22
AC4
B
140 152Right-handed alpha
Helix 23
AC5
B
166 180Right-handed alpha
Helix 24
AC6
A
908 912Right-handed 310
Helix 25
AC7
A
920 934Right-handed alpha
Helix 26
AC8
A
946 961Right-handed alpha
Helix 27
AC9
A
962 964Right-handed 310
Helix 28
AD1
A
972 987Right-handed alpha
Helix 29
AD2
A
993 995Right-handed 310
Helix 30
AD3
A
996 1005Right-handed alpha
Helix 31
AD4
A
1008 1022Right-handed alpha
Helix 32
AD5
A
1024 1044Right-handed alpha
Helix 33
AD6
A
1044 1049Right-handed alpha
Helix 34
AD7
A
1051 1065Right-handed alpha
Helix 35
AD8
A
1070 1083Right-handed alpha
Helix 36
AD9
A
1083 1088Right-handed alpha
Helix 37
AE1
A
1091 1101Right-handed alpha
Helix 38
AE2
A
17 26Right-handed alpha
Helix 39
AE3
A
63 67Right-handed 310
Helix 40
AE4
A
69 74Right-handed 310
Helix 41
AE5
A
88 98Right-handed alpha
Helix 42
AE6
A
98 107Right-handed alpha
Helix 43
AE7
A
118 122Right-handed 310
Helix 44
AE8
A
124 134Right-handed alpha
Helix 45
AE9
A
140 152Right-handed alpha
Helix 46
AF1
A
166 180Right-handed alpha
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There are 2 sheets in PDB entry 5JCP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 48first strand
Strand 2
B
51 58anti-parallel
Strand 3
B
4 12parallel
Strand 4
B
79 85parallel
Strand 5
B
112 117parallel
Strand 6
B
155 158parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
4 12parallel
Strand 4
A
79 85parallel
Strand 5
A
112 117parallel
Strand 6
A
155 158parallel
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