Analysis of interatomic Contacts of Structural Units in PDB entry:
5JCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JCV entry

There is 1 chain in PDB entry 5JCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 63LEU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5JCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 73Right-handed alpha
Helix 2
AA2
A
96 101Right-handed alpha
Helix 3
AA3
A
141 148Right-handed 310
Helix 4
AA4
A
149 156Right-handed alpha
Helix 5
AA5
A
182 186Right-handed 310
Helix 6
AA6
A
191 206Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JCV.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
113 115parallel
Strand 4
A
127 132anti-parallel
Strand 5
A
220 225parallel
Strand 6
A
236 242anti-parallel
Strand 7
A
167 178anti-parallel
Strand 8
A
158 162anti-parallel
Strand 9
A
74 79anti-parallel
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