Analysis of interatomic Contacts of Structural Units in PDB entry:
5JCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JCZ entry

There are 5 chains in PDB entry 5JCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6SER 177
B
 PHE 1471VAL 1853
C
 LYS 1469VAL 1853
D
 ASP 5SER 177
E
 PHE 1471ILE 1662
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 5JCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 34Right-handed alpha
Helix 2
AA2
A
73 82Right-handed alpha
Helix 3
AA3
A
95 101Right-handed alpha
Helix 4
AA4
A
101 113Right-handed alpha
Helix 5
AA5
A
128 132Right-handed 310
Helix 6
AA6
A
135 146Right-handed alpha
Helix 7
AA7
A
160 177Right-handed alpha
Helix 8
AA8
B
1478 1480Right-handed 310
Helix 9
AA9
B
1481 1490Right-handed alpha
Helix 10
AB1
B
1505 1521Right-handed alpha
Helix 11
AB2
B
1523 1545Right-handed alpha
Helix 12
AB3
B
1548 1569Right-handed alpha
Helix 13
AB4
B
1572 1576Right-handed 310
Helix 14
AB5
B
1580 1585Right-handed alpha
Helix 15
AB6
B
1593 1628Right-handed alpha
Helix 16
AB7
B
1658 1676Right-handed alpha
Helix 17
AB8
B
1679 1703Right-handed alpha
Helix 18
AB9
B
1705 1709Right-handed 310
Helix 19
AC1
B
1710 1731Right-handed alpha
Helix 20
AC2
B
1739 1741Right-handed 310
Helix 21
AC3
B
1742 1754Right-handed alpha
Helix 22
AC4
B
1758 1769Right-handed alpha
Helix 23
AC5
B
1773 1784Right-handed alpha
Helix 24
AC6
B
1795 1806Right-handed alpha
Helix 25
AC7
B
1835 1839Right-handed 310
Helix 26
AC8
B
1842 1846Right-handed 310
Helix 27
AC9
C
1478 1480Right-handed 310
Helix 28
AD1
C
1481 1490Right-handed alpha
Helix 29
AD2
C
1498 1502Right-handed 310
Helix 30
AD3
C
1505 1521Right-handed alpha
Helix 31
AD4
C
1523 1545Right-handed alpha
Helix 32
AD5
C
1548 1569Right-handed alpha
Helix 33
AD6
C
1572 1576Right-handed 310
Helix 34
AD7
C
1580 1585Right-handed alpha
Helix 35
AD8
C
1593 1620Right-handed alpha
Helix 36
AD9
C
1622 1628Right-handed alpha
Helix 37
AE1
C
1658 1676Right-handed alpha
Helix 38
AE2
C
1679 1703Right-handed alpha
Helix 39
AE3
C
1705 1709Right-handed 310
Helix 40
AE4
C
1710 1731Right-handed alpha
Helix 41
AE5
C
1737 1742Right-handed alpha
Helix 42
AE6
C
1742 1754Right-handed alpha
Helix 43
AE7
C
1758 1769Right-handed alpha
Helix 44
AE8
C
1773 1784Right-handed alpha
Helix 45
AE9
C
1795 1806Right-handed alpha
Helix 46
AF1
C
1807 1809Right-handed 310
Helix 47
AF2
C
1835 1839Right-handed 310
Helix 48
AF3
C
1842 1846Right-handed 310
Helix 49
AF4
D
23 34Right-handed alpha
Helix 50
AF5
D
73 82Right-handed alpha
Helix 51
AF6
D
95 101Right-handed alpha
Helix 52
AF7
D
101 113Right-handed alpha
Helix 53
AF8
D
128 132Right-handed 310
Helix 54
AF9
D
135 146Right-handed alpha
Helix 55
AG1
D
160 177Right-handed alpha
Helix 56
AG2
E
1478 1480Right-handed 310
Helix 57
AG3
E
1481 1490Right-handed alpha
Helix 58
AG4
E
1497 1503Right-handed alpha
Helix 59
AG5
E
1505 1521Right-handed alpha
Helix 60
AG6
E
1523 1545Right-handed alpha
Helix 61
AG7
E
1548 1569Right-handed alpha
Helix 62
AG8
E
1572 1576Right-handed 310
Helix 63
AG9
E
1580 1585Right-handed alpha
Helix 64
AH1
E
1593 1628Right-handed alpha
Helix 65
AH2
E
1658 1676Right-handed alpha
Helix 66
AH3
E
1679 1705Right-handed alpha
Helix 67
AH4
E
1710 1731Right-handed alpha
Helix 68
AH5
E
1739 1741Right-handed 310
Helix 69
AH6
E
1742 1754Right-handed alpha
Helix 70
AH7
E
1758 1769Right-handed alpha
Helix 71
AH8
E
1773 1784Right-handed alpha
Helix 72
AH9
E
1795 1806Right-handed alpha
Helix 73
AI1
E
1807 1809Right-handed 310
Helix 74
AI2
E
1835 1839Right-handed 310
Helix 75
AI3
E
1842 1846Right-handed 310
Helix 76
AI4
I
23 34Right-handed alpha
Helix 77
AI5
I
76 82Right-handed alpha
Helix 78
AI6
I
95 101Right-handed alpha
Helix 79
AI7
I
101 113Right-handed alpha
Helix 80
AI8
I
135 136Right-handed 310
Helix 81
AI9
I
138 138Right-handed 310
Helix 82
AJ1
I
139 146Right-handed alpha
Helix 83
AJ2
I
160 174Right-handed alpha
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There are 6 sheets in PDB entry 5JCZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 55first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
10 17parallel
Strand 4
A
86 92parallel
Strand 5
A
118 124parallel
Strand 6
A
149 152parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1474 1476first strand
Strand 2
B
1851 1853anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1474 1476first strand
Strand 2
C
1851 1853anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 55first strand
Strand 2
D
58 67anti-parallel
Strand 3
D
10 17parallel
Strand 4
D
86 92parallel
Strand 5
D
118 124parallel
Strand 6
D
149 152parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1474 1476first strand
Strand 2
E
1851 1853anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
46 49first strand
Strand 2
I
62 67anti-parallel
Strand 3
I
12 18parallel
Strand 4
I
87 92parallel
Strand 5
I
119 124parallel
Strand 6
I
149 152parallel
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