Analysis of interatomic Contacts of Structural Units in PDB entry:
5JD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JD0 entry

There are 2 chains in PDB entry 5JD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 907THR 1107
B
 GLY 906THR 1106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5JD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
908 912Right-handed 310
Helix 2
AA2
A
920 934Right-handed alpha
Helix 3
AA3
A
946 961Right-handed alpha
Helix 4
AA4
A
962 964Right-handed 310
Helix 5
AA5
A
972 987Right-handed alpha
Helix 6
AA6
A
996 1005Right-handed alpha
Helix 7
AA7
A
1008 1021Right-handed alpha
Helix 8
AA8
A
1024 1044Right-handed alpha
Helix 9
AA9
A
1044 1049Right-handed alpha
Helix 10
AB1
A
1051 1065Right-handed alpha
Helix 11
AB2
A
1070 1083Right-handed alpha
Helix 12
AB3
A
1083 1088Right-handed alpha
Helix 13
AB4
A
1091 1107Right-handed alpha
Helix 14
AB5
B
908 912Right-handed 310
Helix 15
AB6
B
920 934Right-handed alpha
Helix 16
AB7
B
946 961Right-handed alpha
Helix 17
AB8
B
962 964Right-handed 310
Helix 18
AB9
B
972 987Right-handed alpha
Helix 19
AC1
B
996 1005Right-handed alpha
Helix 20
AC2
B
1008 1021Right-handed alpha
Helix 21
AC3
B
1024 1044Right-handed alpha
Helix 22
AC4
B
1044 1049Right-handed alpha
Helix 23
AC5
B
1051 1064Right-handed alpha
Helix 24
AC6
B
1070 1083Right-handed alpha
Helix 25
AC7
B
1083 1088Right-handed alpha
Helix 26
AC8
B
1091 1105Right-handed alpha
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There are no sheets in PDB entry 5JD0
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il