Analysis of interatomic Contacts of Structural Units in PDB entry:
5JD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JD5 entry

There are 8 chains in PDB entry 5JD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5GLU 168
A
 ALA 170ASP 321
B
 ASP 4GLU 168
B
 ALA 170ASP 321
C
 PRO 6GLU 168
C
 ALA 170THR 320
D
 ASN 5GLU 168
D
 ALA 170ASP 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5JD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed 310
Helix 2
AA2
A
18 35Right-handed alpha
Helix 3
AA3
A
37 42Right-handed alpha
Helix 4
AA4
A
42 52Right-handed alpha
Helix 5
AA5
A
108 120Right-handed alpha
Helix 6
AA6
A
137 159Right-handed alpha
Helix 7
AA7
A
169 187Right-handed alpha
Helix 8
AA8
A
206 212Right-handed alpha
Helix 9
AA9
A
221 233Right-handed alpha
Helix 10
AB1
A
245 249Right-handed 310
Helix 11
AB2
A
267 281Right-handed alpha
Helix 12
AB3
A
296 300Right-handed 310
Helix 13
AB4
A
302 319Right-handed alpha
Helix 14
AB5
B
8 17Right-handed 310
Helix 15
AB6
B
18 35Right-handed alpha
Helix 16
AB7
B
37 42Right-handed alpha
Helix 17
AB8
B
42 52Right-handed alpha
Helix 18
AB9
B
108 120Right-handed alpha
Helix 19
AC1
B
137 159Right-handed alpha
Helix 20
AC2
B
169 187Right-handed alpha
Helix 21
AC3
B
206 212Right-handed alpha
Helix 22
AC4
B
221 233Right-handed alpha
Helix 23
AC5
B
245 249Right-handed 310
Helix 24
AC6
B
267 281Right-handed alpha
Helix 25
AC7
B
296 300Right-handed 310
Helix 26
AC8
B
302 318Right-handed alpha
Helix 27
AC9
B
319 321Right-handed 310
Helix 28
AD1
C
8 17Right-handed 310
Helix 29
AD2
C
18 35Right-handed alpha
Helix 30
AD3
C
37 42Right-handed alpha
Helix 31
AD4
C
42 52Right-handed alpha
Helix 32
AD5
C
108 120Right-handed alpha
Helix 33
AD6
C
137 159Right-handed alpha
Helix 34
AD7
C
169 186Right-handed alpha
Helix 35
AD8
C
206 212Right-handed alpha
Helix 36
AD9
C
221 233Right-handed alpha
Helix 37
AE1
C
245 249Right-handed 310
Helix 38
AE2
C
267 281Right-handed alpha
Helix 39
AE3
C
296 300Right-handed 310
Helix 40
AE4
C
302 318Right-handed alpha
Helix 41
AE5
D
8 17Right-handed 310
Helix 42
AE6
D
18 35Right-handed alpha
Helix 43
AE7
D
37 42Right-handed alpha
Helix 44
AE8
D
42 52Right-handed alpha
Helix 45
AE9
D
108 120Right-handed alpha
Helix 46
AF1
D
137 159Right-handed alpha
Helix 47
AF2
D
169 187Right-handed alpha
Helix 48
AF3
D
206 212Right-handed alpha
Helix 49
AF4
D
221 233Right-handed alpha
Helix 50
AF5
D
245 249Right-handed 310
Helix 51
AF6
D
267 281Right-handed alpha
Helix 52
AF7
D
296 300Right-handed 310
Helix 53
AF8
D
302 319Right-handed alpha
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There are 4 sheets in PDB entry 5JD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 73first strand
Strand 2
A
76 83anti-parallel
Strand 3
A
122 126anti-parallel
Strand 4
A
91 95parallel
Strand 5
A
163 168parallel
Strand 6
A
191 197parallel
Strand 7
A
257 264parallel
Strand 8
A
285 294parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 73first strand
Strand 2
B
76 83anti-parallel
Strand 3
B
122 127anti-parallel
Strand 4
B
91 95parallel
Strand 5
B
163 168parallel
Strand 6
B
191 197parallel
Strand 7
B
257 264parallel
Strand 8
B
285 294parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 73first strand
Strand 2
C
76 83anti-parallel
Strand 3
C
122 126anti-parallel
Strand 4
C
91 95parallel
Strand 5
C
163 168parallel
Strand 6
C
191 197parallel
Strand 7
C
257 264parallel
Strand 8
C
285 294parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 73first strand
Strand 2
D
76 83anti-parallel
Strand 3
D
122 126anti-parallel
Strand 4
D
91 95parallel
Strand 5
D
163 168parallel
Strand 6
D
191 197parallel
Strand 7
D
257 264parallel
Strand 8
D
285 294parallel
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